Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TRIM38 182 50 70 51 0 0 0.705 0.194 0.271 0.198 0.000 0.000 chr6 25957802 25996231
view TRIM39 230 90 24 13 1 1 0.891 0.349 0.093 0.050 0.004 0.004 chr6 30321927 30348729
view TRIM3 191 53 57 42 0 0 0.740 0.205 0.221 0.163 0.000 0.000 chr11 6443613 6478941
view TRIM40 229 87 28 17 1 1 0.888 0.337 0.109 0.066 0.004 0.004 chr6 30131140 30153728
view TRIM41 198 67 54 34 0 0 0.767 0.260 0.209 0.132 0.000 0.000 chr5 181218281 181240808
view TRIM42 204 72 48 29 0 0 0.791 0.279 0.186 0.112 0.000 0.000 chr3 140673064 140706150
view TRIM43B 211 82 46 23 1 0 0.818 0.318 0.178 0.089 0.004 0.000 chr2 95472008 95489754
view TRIM43 196 71 56 30 4 2 0.760 0.275 0.217 0.116 0.016 0.008 chr2 95587001 95604778
view TRIM44 195 66 40 23 0 0 0.756 0.256 0.155 0.089 0.000 0.000 chr11 35657775 35823007
view TRIM45 176 46 78 56 0 0 0.682 0.178 0.302 0.217 0.000 0.000 chr1 117106060 117126749
view TRIM46 173 45 75 52 0 0 0.671 0.174 0.291 0.202 0.000 0.000 chr1 155168849 155189970
view TRIM47 186 61 69 41 0 0 0.721 0.236 0.267 0.159 0.000 0.000 chr17 75869164 75883581
view TRIM48 135 44 102 51 0 0 0.523 0.171 0.395 0.198 0.000 0.000 chr11 55257155 55276114
view TRIM49B 214 76 41 26 0 0 0.829 0.295 0.159 0.101 0.000 0.000 chr11 49023823 49043155
view TRIM49C 59 23 147 68 1 0 0.229 0.089 0.570 0.264 0.004 0.000 chr11 90026106 90047025
view TRIM49D1 103 27 100 38 0 0 0.399 0.105 0.388 0.147 0.000 0.000 chr11 89906409 89927245
view TRIM49D2 128 38 101 52 1 0 0.496 0.147 0.391 0.202 0.004 0.000 chr11 89919064 89938063
view TRIM49 126 47 38 23 90 32 0.488 0.182 0.147 0.089 0.349 0.124 chr11 89792655 89813575
view TRIM4 160 49 86 51 0 0 0.620 0.190 0.333 0.198 0.000 0.000 chr7 99885403 99924530
view TRIM50 172 51 79 49 0 0 0.667 0.198 0.306 0.190 0.000 0.000 chr7 73307536 73333082
view TRIM51G 211 75 44 28 1 1 0.818 0.291 0.171 0.109 0.004 0.004 chr11 48970498 48988885
view TRIM51 217 82 39 22 1 0 0.841 0.318 0.151 0.085 0.004 0.000 chr11 55878297 55896810
view TRIM52 204 72 50 30 0 0 0.791 0.279 0.194 0.116 0.000 0.000 chr5 181250147 181266143
view TRIM54 137 31 107 63 0 0 0.531 0.120 0.415 0.244 0.000 0.000 chr2 27277429 27312435
view TRIM55 123 24 104 63 0 0 0.477 0.093 0.403 0.244 0.000 0.000 chr8 66122129 66180485
view TRIM56 209 74 41 25 0 0 0.810 0.287 0.159 0.097 0.000 0.000 chr7 101080481 101102967
view TRIM58 226 79 24 22 2 0 0.876 0.306 0.093 0.085 0.008 0.000 chr1 247852187 247885138
view TRIM59 179 56 74 45 1 0 0.694 0.217 0.287 0.174 0.004 0.000 chr3 160430503 160454786
view TRIM5 222 82 32 20 0 0 0.860 0.318 0.124 0.078 0.000 0.000 chr11 5658195 5690074
view TRIM60 193 61 61 40 0 0 0.748 0.236 0.236 0.155 0.000 0.000 chr4 165026999 165046749
view TRIM61 203 67 51 35 0 0 0.787 0.260 0.198 0.136 0.000 0.000 chr4 164963281 164982657
view TRIM62 169 56 75 39 0 0 0.655 0.217 0.291 0.151 0.000 0.000 chr1 33140399 33187043
view TRIM63 168 49 80 49 0 0 0.651 0.190 0.310 0.190 0.000 0.000 chr1 26046301 26072630
view TRIM64B 104 54 45 31 107 18 0.403 0.209 0.174 0.120 0.415 0.070 chr11 89865438 89883487
view TRIM64C 205 74 47 26 1 0 0.795 0.287 0.182 0.101 0.004 0.000 chr11 49048714 49064112
view TRIM64 12 7 53 24 1 0 0.047 0.027 0.205 0.093 0.004 0.000 chr11 89961037 89979072
view TRIM65 178 56 70 42 1 0 0.690 0.217 0.271 0.163 0.004 0.000 chr17 75883963 75901951
view TRIM66 194 71 57 30 0 0 0.752 0.275 0.221 0.116 0.000 0.000 chr11 8607040 8687665
view TRIM67 176 51 56 36 0 0 0.682 0.198 0.217 0.140 0.000 0.000 chr1 231157058 231226565
view TRIM68 180 57 75 45 0 0 0.698 0.221 0.291 0.174 0.000 0.000 chr11 4593672 4613231
view TRIM69 174 52 73 48 0 0 0.674 0.202 0.283 0.186 0.000 0.000 chr15 44731528 44772827
view TRIM6 239 93 16 9 0 0 0.926 0.360 0.062 0.035 0.000 0.000 chr11 5591637 5617952
view TRIM71 163 48 70 41 0 0 0.632 0.186 0.271 0.159 0.000 0.000 chr3 32812997 32902824
view TRIM72 155 37 87 55 0 0 0.601 0.143 0.337 0.213 0.000 0.000 chr16 31209119 31236537
view TRIM73 161 27 73 56 1 0 0.624 0.105 0.283 0.217 0.004 0.000 chr7 75390629 75410605
view TRIM74 152 40 100 60 0 0 0.589 0.155 0.388 0.233 0.000 0.000 chr7 72954485 72974466
view TRIM75 211 69 46 35 0 0 0.818 0.267 0.178 0.136 0.000 0.000 chr4 165048866 165065554
view TRIM77 209 76 47 29 2 0 0.810 0.295 0.182 0.112 0.008 0.000 chr11 89705299 89722872
view TRIM7 196 62 56 37 0 0 0.760 0.240 0.217 0.143 0.000 0.000 chr5 181188924 181210196
view TRIM8 186 59 60 38 1 0 0.721 0.229 0.233 0.147 0.004 0.000 chr10 102639479 102663318