Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TSPAN15 169 44 73 48 0 0 0.655 0.171 0.283 0.186 0.000 0.000 chr10 69446465 69512666
view TSPAN16 190 64 55 33 0 0 0.736 0.248 0.213 0.128 0.000 0.000 chr19 11291160 11320967
view TSPAN17 204 62 52 41 0 0 0.791 0.240 0.202 0.159 0.000 0.000 chr5 176642484 176664051
view TSPAN18 144 32 67 42 0 0 0.558 0.124 0.260 0.163 0.000 0.000 chr11 44721962 44937423
view TSPAN19 174 57 80 46 0 0 0.674 0.221 0.310 0.178 0.000 0.000 chr12 85009317 85041277
view TSPAN1 217 77 38 26 0 0 0.841 0.298 0.147 0.101 0.000 0.000 chr1 46170087 46190962
view TSPAN2 180 60 68 35 0 0 0.698 0.233 0.264 0.136 0.000 0.000 chr1 115043011 115094503
view TSPAN31 185 49 70 54 0 0 0.717 0.190 0.271 0.209 0.000 0.000 chr12 57740039 57755219
view TSPAN32 205 63 45 34 0 0 0.795 0.244 0.174 0.132 0.000 0.000 chr11 2297013 2323204
view TSPAN33 215 82 39 21 0 0 0.833 0.318 0.151 0.081 0.000 0.000 chr7 129139707 129174699
view TSPAN3 1 1 29 5 0 0 0.004 0.004 0.112 0.019 0.000 0.000 chr15 77036404 77076109
view TSPAN4 196 63 46 30 0 0 0.760 0.244 0.178 0.116 0.000 0.000 chr11 837852 872111
view TSPAN5 117 22 86 55 0 0 0.453 0.085 0.333 0.213 0.000 0.000 chr4 98465367 98663611
view TSPAN6 93 26 159 73 0 0 0.360 0.101 0.616 0.283 0.000 0.000 chrX 100622108 100641806
view TSPAN7 47 9 181 82 0 0 0.182 0.035 0.702 0.318 0.000 0.000 chrX 38556542 38693918
view TSPAN8 206 70 46 30 0 0 0.798 0.271 0.178 0.116 0.000 0.000 chr12 71120096 71162999
view TSPAN9 143 32 56 39 0 0 0.554 0.124 0.217 0.151 0.000 0.000 chr12 3072379 3291559
view TSPEAR 146 33 59 38 0 0 0.566 0.128 0.229 0.147 0.000 0.000 chr21 44492893 44716572
view TSPO2 179 61 75 41 0 0 0.694 0.236 0.291 0.159 0.000 0.000 chr6 41037467 41049337
view TSPOAP1 170 51 74 43 0 0 0.659 0.198 0.287 0.167 0.000 0.000 chr17 58296231 58333795
view TSPO 199 62 55 39 0 0 0.771 0.240 0.213 0.151 0.000 0.000 chr22 43146559 43168242
view TSPY10 51 17 49 28 16 1 0.198 0.066 0.190 0.109 0.062 0.004 chrY 9522880 9535676
view TSPY1 28 5 40 12 14 2 0.109 0.019 0.155 0.047 0.054 0.008 chrY 9461955 9474749
view TSPY2 13 3 108 46 0 0 0.050 0.012 0.419 0.178 0.000 0.000 chrY 6241223 6254018
view TSPY3 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chrY 9393421 9406217
view TSPY4 0 0 122 50 0 0 0.000 0.000 0.473 0.194 0.000 0.000 chrY 9332464 9345278
view TSPY8 28 13 51 27 11 1 0.109 0.050 0.198 0.105 0.043 0.004 chrY 9352797 9365593
view TSPY9 20 13 4 4 106 39 0.078 0.050 0.016 0.016 0.411 0.151 chrY 9482267 9495081
view TSPYL1 207 73 48 29 1 1 0.802 0.283 0.186 0.112 0.004 0.004 chr6 116269858 116284930
view TSPYL2 66 16 189 86 0 0 0.256 0.062 0.733 0.333 0.000 0.000 chrX 53077367 53093540
view TSPYL4 199 75 58 29 1 1 0.771 0.291 0.225 0.112 0.004 0.004 chr6 116244964 116259075
view TSPYL5 205 69 50 34 1 0 0.795 0.267 0.194 0.132 0.004 0.000 chr8 97268488 97282928
view TSPYL6 217 76 39 27 1 1 0.841 0.295 0.151 0.105 0.004 0.004 chr2 54248178 54261229
view TSR1 203 68 46 30 0 0 0.787 0.264 0.178 0.116 0.000 0.000 chr17 2317396 2341457
view TSR2 83 23 174 81 0 0 0.322 0.089 0.674 0.314 0.000 0.000 chrX 54435404 54453032
view TSR3 181 50 69 50 0 0 0.702 0.194 0.267 0.194 0.000 0.000 chr16 1344240 1356878
view TSSC4 217 70 36 30 0 0 0.841 0.271 0.140 0.116 0.000 0.000 chr11 2395750 2408876
view TSSK1B 186 63 69 40 0 0 0.721 0.244 0.267 0.155 0.000 0.000 chr5 113427553 113439989
view TSSK2 219 78 36 24 0 0 0.849 0.302 0.140 0.093 0.000 0.000 chr22 19126308 19137622
view TSSK3 145 31 111 72 0 0 0.562 0.120 0.430 0.279 0.000 0.000 chr1 32357539 32369312
view TSSK4 213 75 40 25 0 0 0.826 0.291 0.155 0.097 0.000 0.000 chr14 24200696 24213248
view TSSK6 192 61 60 39 1 0 0.744 0.236 0.233 0.151 0.004 0.000 chr19 19509219 19520548
view TSTD1 195 65 60 37 0 0 0.756 0.252 0.233 0.143 0.000 0.000 chr1 161032631 161043964
view TSTD2 186 65 66 39 1 0 0.721 0.252 0.256 0.151 0.004 0.000 chr9 97595080 97638368
view TSTD3 217 80 35 20 1 1 0.841 0.310 0.136 0.078 0.004 0.004 chr6 99516049 99538185
view TST 217 77 39 26 0 0 0.841 0.298 0.151 0.101 0.000 0.000 chr22 37005865 37024447
view TTBK1 173 52 63 37 0 0 0.671 0.202 0.244 0.143 0.000 0.000 chr6 43238481 43293258
view TTBK2 123 42 99 43 0 0 0.477 0.163 0.384 0.167 0.000 0.000 chr15 42733730 42925778
view TTC12 171 54 77 43 0 0 0.663 0.209 0.298 0.167 0.000 0.000 chr11 113309583 113371387
view TTC13 167 55 73 42 0 0 0.647 0.213 0.283 0.163 0.000 0.000 chr1 230901243 230983861