Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TTC14 166 45 88 58 0 0 0.643 0.174 0.341 0.225 0.000 0.000 chr3 180597163 180616130
view TTC16 166 37 79 56 0 0 0.643 0.143 0.306 0.217 0.000 0.000 chr9 127711079 127736590
view TTC17 148 40 81 44 0 0 0.574 0.155 0.314 0.171 0.000 0.000 chr11 43353920 43499931
view TTC19 163 45 85 54 0 0 0.632 0.174 0.329 0.209 0.000 0.000 chr17 15994824 16034404
view TTC1 191 72 53 23 0 0 0.740 0.279 0.205 0.089 0.000 0.000 chr5 160004139 160070543
view TTC21A 195 67 54 31 0 0 0.756 0.260 0.209 0.120 0.000 0.000 chr3 39102680 39143900
view TTC21B 203 77 46 24 0 0 0.787 0.298 0.178 0.093 0.000 0.000 chr2 165868362 165958776
view TTC22 224 84 30 17 0 0 0.868 0.326 0.116 0.066 0.000 0.000 chr1 54774712 54806323
view TTC23L 195 60 46 33 0 0 0.756 0.233 0.178 0.128 0.000 0.000 chr5 34834164 34905511
view TTC23 183 63 55 32 0 0 0.709 0.244 0.213 0.124 0.000 0.000 chr15 99131323 99254581
view TTC24 220 80 37 24 0 0 0.853 0.310 0.143 0.093 0.000 0.000 chr1 156574723 156592719
view TTC27 161 60 67 35 0 0 0.624 0.233 0.260 0.136 0.000 0.000 chr2 32623050 32826051
view TTC28 98 16 76 47 0 0 0.380 0.062 0.295 0.182 0.000 0.000 chr22 27973014 28684840
view TTC29 145 46 69 35 0 0 0.562 0.178 0.267 0.136 0.000 0.000 chr4 146701617 146950864
view TTC31 165 44 87 57 0 0 0.640 0.171 0.337 0.221 0.000 0.000 chr2 74478081 74499559
view TTC32 211 73 45 31 1 0 0.818 0.283 0.174 0.120 0.004 0.000 chr2 19891631 19906983
view TTC33 196 67 55 31 0 0 0.760 0.260 0.213 0.120 0.000 0.000 chr5 40706576 40760961
view TTC34 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr1 2631986 2806693
view TTC36 204 69 51 35 0 0 0.791 0.267 0.198 0.136 0.000 0.000 chr11 118522474 118535993
view TTC38 115 9 126 83 0 0 0.446 0.035 0.488 0.322 0.000 0.000 chr22 46263008 46299008
view TTC39A 154 40 80 48 0 0 0.597 0.155 0.310 0.186 0.000 0.000 chr1 51282258 51335562
view TTC39B 130 31 76 46 0 0 0.504 0.120 0.295 0.178 0.000 0.000 chr9 15158622 15312216
view TTC39C 163 50 68 43 0 0 0.632 0.194 0.264 0.167 0.000 0.000 chr18 24009754 24140600
view TTC3 169 58 70 38 0 0 0.655 0.225 0.271 0.147 0.000 0.000 chr21 37068254 37208107
view TTC4 198 68 48 28 0 0 0.767 0.264 0.186 0.109 0.000 0.000 chr1 54710861 54747657
view TTC5 207 74 44 24 0 0 0.802 0.287 0.171 0.093 0.000 0.000 chr14 20281227 20310951
view TTC6 109 27 88 50 0 0 0.422 0.105 0.341 0.194 0.000 0.000 chr14 37590629 37847717
view TTC7A 156 43 64 37 0 0 0.605 0.167 0.248 0.143 0.000 0.000 chr2 46936224 47081123
view TTC7B 99 27 79 38 0 0 0.384 0.105 0.306 0.147 0.000 0.000 chr14 90519564 90821430
view TTC8 199 71 51 28 0 0 0.771 0.275 0.198 0.109 0.000 0.000 chr14 88819651 88882988
view TTC9B 208 67 46 34 1 1 0.806 0.260 0.178 0.132 0.004 0.004 chr19 40211058 40223384
view TTC9C 183 61 66 37 0 0 0.709 0.236 0.256 0.143 0.000 0.000 chr11 62723486 62743636
view TTC9 222 83 34 22 0 0 0.860 0.322 0.132 0.085 0.000 0.000 chr14 70636916 70680366
view TTF1 199 78 51 20 0 0 0.771 0.302 0.198 0.078 0.000 0.000 chr9 132370548 132411840
view TTF2 163 38 71 50 0 0 0.632 0.147 0.275 0.194 0.000 0.000 chr1 117055326 117112453
view TTI1 197 71 52 28 0 0 0.764 0.275 0.202 0.109 0.000 0.000 chr20 37978021 38038456
view TTI2 198 73 55 28 0 0 0.767 0.283 0.213 0.109 0.000 0.000 chr8 33493722 33518135
view TTK 163 54 88 49 0 0 0.632 0.209 0.341 0.190 0.000 0.000 chr6 79999649 80047527
view TTLL10 190 54 56 40 0 0 0.736 0.209 0.217 0.155 0.000 0.000 chr1 1168880 1202936
view TTLL11 86 5 107 67 0 0 0.333 0.019 0.415 0.260 0.000 0.000 chr9 121810674 122098308
view TTLL12 196 53 47 38 0 0 0.760 0.205 0.182 0.147 0.000 0.000 chr22 43161622 43192134
view TTLL13 215 76 39 26 0 0 0.833 0.295 0.151 0.101 0.000 0.000 chr15 90244556 90270477
view TTLL1 179 49 60 41 0 0 0.694 0.190 0.233 0.159 0.000 0.000 chr22 43034516 43094391
view TTLL2 211 72 41 28 0 0 0.818 0.279 0.159 0.109 0.000 0.000 chr6 167320086 167347688
view TTLL3 199 69 50 30 0 0 0.771 0.267 0.194 0.116 0.000 0.000 chr3 9805262 9841365
view TTLL4 130 30 117 66 0 0 0.504 0.116 0.453 0.256 0.000 0.000 chr2 218705835 218760416
view TTLL5 98 29 101 53 0 0 0.380 0.112 0.391 0.205 0.000 0.000 chr14 75656246 75960079
view TTLL6 164 44 77 48 0 0 0.636 0.171 0.298 0.186 0.000 0.000 chr17 48757234 48822229
view TTLL7 150 46 83 48 0 0 0.581 0.178 0.322 0.186 0.000 0.000 chr1 83860024 84004132
view TTLL8 111 30 115 52 0 0 0.430 0.116 0.446 0.202 0.000 0.000 chr22 50013575 50063298