Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view UQCC1 127 31 111 67 0 0 0.492 0.120 0.430 0.260 0.000 0.000 chr20 35297578 35416973
view UQCC2 200 70 52 30 1 1 0.775 0.271 0.202 0.116 0.004 0.004 chr6 33691764 33716700
view UQCC3 163 42 87 57 1 0 0.632 0.163 0.337 0.221 0.004 0.000 chr11 62666673 62678686
view UQCC4 181 48 71 52 0 0 0.702 0.186 0.275 0.202 0.000 0.000 chr16 1414752 1425747
view UQCC5 193 55 62 47 0 0 0.748 0.213 0.240 0.182 0.000 0.000 chr3 52531605 52546890
view UQCC6 230 85 26 18 1 1 0.891 0.329 0.101 0.070 0.004 0.004 chr12 103945194 103962215
view UQCR10 206 68 49 34 0 0 0.798 0.264 0.190 0.132 0.000 0.000 chr22 29762369 29775413
view UQCR11 181 47 68 51 0 0 0.702 0.182 0.264 0.198 0.000 0.000 chr19 1592169 1610462
view UQCRB 191 58 66 47 0 0 0.740 0.225 0.256 0.182 0.000 0.000 chr8 96217947 96240545
view UQCRC1 153 36 99 64 0 0 0.593 0.140 0.384 0.248 0.000 0.000 chr3 48594002 48614646
view UQCRC2 180 65 69 34 0 0 0.698 0.252 0.267 0.132 0.000 0.000 chr16 21948361 21988660
view UQCRFS1 217 80 38 22 1 1 0.841 0.310 0.147 0.085 0.004 0.004 chr19 29200320 29218151
view UQCRHL 182 54 71 47 1 1 0.705 0.209 0.275 0.182 0.004 0.004 chr1 15802374 15812649
view UQCRH 216 77 38 24 0 0 0.837 0.298 0.147 0.093 0.000 0.000 chr1 46298698 46321776
view UQCRQ 225 87 33 18 0 0 0.872 0.337 0.128 0.070 0.000 0.000 chr5 132861642 132873847
view URAD 213 73 40 28 0 0 0.826 0.283 0.155 0.109 0.000 0.000 chr13 27972717 27993693
view URB1 168 53 66 39 0 0 0.651 0.205 0.256 0.151 0.000 0.000 chr21 32306018 32398012
view URB2 177 58 64 37 0 0 0.686 0.225 0.248 0.143 0.000 0.000 chr1 229621247 229665200
view URGCP 201 72 52 30 0 0 0.779 0.279 0.202 0.116 0.000 0.000 chr7 43870913 43911596
view URI1 163 53 65 40 0 0 0.632 0.205 0.252 0.155 0.000 0.000 chr19 29937239 30021612
view URM1 171 62 79 39 0 0 0.663 0.240 0.306 0.151 0.000 0.000 chr9 128366374 128397016
view UROC1 189 60 51 32 0 0 0.733 0.233 0.198 0.124 0.000 0.000 chr3 126476166 126522773
view UROD 199 64 51 33 0 0 0.771 0.248 0.198 0.128 0.000 0.000 chr1 45007254 45020575
view UROS 203 76 42 22 0 0 0.787 0.295 0.163 0.085 0.000 0.000 chr10 125783586 125828258
view USB1 167 51 80 46 0 0 0.647 0.198 0.310 0.178 0.000 0.000 chr16 57996407 58026618
view USE1 210 69 44 33 1 0 0.814 0.267 0.171 0.128 0.004 0.000 chr19 17210357 17224829
view USF1 197 68 56 32 0 0 0.764 0.264 0.217 0.124 0.000 0.000 chr1 161034251 161050977
view USF2 212 76 40 26 0 0 0.822 0.295 0.155 0.101 0.000 0.000 chr19 35263962 35284821
view USF3 170 57 73 38 0 0 0.659 0.221 0.283 0.147 0.000 0.000 chr3 113643385 113701642
view USH1C 180 60 55 33 0 0 0.698 0.233 0.213 0.128 0.000 0.000 chr11 17488900 17549416
view USH1G 210 70 45 33 1 0 0.814 0.271 0.174 0.128 0.004 0.000 chr17 74911083 74928255
view USH2A 36 0 118 59 0 0 0.140 0.000 0.457 0.229 0.000 0.000 chr1 215617891 216428448
view USHBP1 205 65 44 33 0 0 0.795 0.252 0.171 0.128 0.000 0.000 chr19 17244171 17269745
view USO1 143 34 90 57 0 0 0.554 0.132 0.349 0.221 0.000 0.000 chr4 75719577 75819286
view USP10 214 82 33 17 0 0 0.829 0.318 0.128 0.066 0.000 0.000 chr16 84695000 84784922
view USP11 79 16 167 80 0 0 0.306 0.062 0.647 0.310 0.000 0.000 chrX 47228009 47253328
view USP12 83 13 126 59 0 0 0.322 0.050 0.488 0.229 0.000 0.000 chr13 27061156 27176811
view USP13 149 37 71 48 0 0 0.578 0.143 0.275 0.186 0.000 0.000 chr3 179648040 179794401
view USP14 189 60 60 39 0 0 0.733 0.233 0.233 0.151 0.000 0.000 chr18 153557 219629
view USP15 173 53 66 39 0 0 0.671 0.205 0.256 0.151 0.000 0.000 chr12 62255404 62421389
view USP16 212 78 41 22 0 0 0.822 0.302 0.159 0.085 0.000 0.000 chr21 29019668 29059488
view USP17L10 2 0 42 13 0 0 0.008 0.000 0.163 0.050 0.000 0.000 chr4 9205657 9217249
view USP17L11 1 0 36 8 0 0 0.004 0.000 0.140 0.031 0.000 0.000 chr4 9210405 9221997
view USP17L12 3 1 27 6 2 0 0.012 0.004 0.105 0.023 0.008 0.000 chr4 9215152 9226744
view USP17L13 4 0 19 4 1 0 0.016 0.000 0.074 0.016 0.004 0.000 chr4 9219896 9231488
view USP17L15 55 8 81 32 26 8 0.213 0.031 0.314 0.124 0.101 0.031 chr4 9229385 9241046
view USP17L17 99 28 59 22 79 51 0.384 0.109 0.229 0.085 0.306 0.198 chr4 9238879 9250471
view USP17L18 105 32 49 14 90 56 0.407 0.124 0.190 0.054 0.349 0.217 chr4 9243630 9255222
view USP17L19 103 32 55 19 87 52 0.399 0.124 0.213 0.074 0.337 0.202 chr4 9248378 9259970
view USP17L1 207 88 46 16 1 0 0.802 0.341 0.178 0.062 0.004 0.000 chr8 7327387 7338979