Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view USP17L20 117 41 57 17 64 40 0.453 0.159 0.221 0.066 0.248 0.155 chr4 9253124 9264716
view USP17L21 87 22 80 43 46 19 0.337 0.085 0.310 0.167 0.178 0.074 chr4 9257872 9269464
view USP17L22 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr4 9262619 9274211
view USP17L24 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr4 9320165 9331757
view USP17L25 16 12 57 35 9 7 0.062 0.047 0.221 0.136 0.035 0.027 chr4 9324911 9336503
view USP17L26 51 23 65 30 49 35 0.198 0.089 0.252 0.116 0.190 0.136 chr4 9329658 9341250
view USP17L27 45 27 87 35 36 25 0.174 0.105 0.337 0.136 0.140 0.097 chr4 9339148 9350740
view USP17L28 44 19 91 35 34 22 0.171 0.074 0.353 0.136 0.132 0.085 chr4 9343893 9355485
view USP17L29 73 14 69 26 33 3 0.283 0.054 0.267 0.101 0.128 0.012 chr4 9348638 9360230
view USP17L2 97 38 78 43 61 10 0.376 0.147 0.302 0.167 0.236 0.039 chr8 12131435 12143849
view USP17L30 165 50 75 49 14 2 0.640 0.194 0.291 0.190 0.054 0.008 chr4 9358129 9369721
view USP17L3 0 0 31 3 0 0 0.000 0.000 0.120 0.012 0.000 0.000 chr8 7971393 7982985
view USP17L4 194 81 54 20 5 0 0.752 0.314 0.209 0.078 0.019 0.000 chr8 7332115 7343707
view USP17L5 65 33 80 33 37 28 0.252 0.128 0.310 0.128 0.143 0.109 chr4 9334403 9345995
view USP17L7 96 40 77 43 64 9 0.372 0.155 0.298 0.167 0.248 0.035 chr8 12127417 12139099
view USP17L8 1 0 17 0 0 0 0.004 0.000 0.066 0.000 0.000 0.000 chr8 7966661 7978253
view USP18 187 62 57 34 0 0 0.725 0.240 0.221 0.132 0.000 0.000 chr22 18145170 18182397
view USP19 154 37 97 64 0 0 0.597 0.143 0.376 0.248 0.000 0.000 chr3 49103050 49125823
view USP1 205 71 45 27 0 0 0.795 0.275 0.174 0.105 0.000 0.000 chr1 62432049 62456804
view USP20 175 45 71 53 0 0 0.678 0.174 0.275 0.205 0.000 0.000 chr9 129830458 129886828
view USP21 185 72 68 30 1 0 0.717 0.279 0.264 0.116 0.004 0.000 chr1 161154500 161170723
view USP22 177 53 65 43 0 0 0.686 0.205 0.252 0.167 0.000 0.000 chr17 20994596 21048011
view USP24 98 25 123 64 0 0 0.380 0.097 0.477 0.248 0.000 0.000 chr1 55061359 55220364
view USP25 99 29 125 63 0 0 0.384 0.112 0.484 0.244 0.000 0.000 chr21 15724982 15885064
view USP26 62 22 179 73 0 0 0.240 0.085 0.694 0.283 0.000 0.000 chrX 133018168 133102109
view USP27X 70 18 183 84 0 0 0.271 0.070 0.709 0.326 0.000 0.000 chrX 49874484 49887558
view USP28 181 64 67 37 0 0 0.702 0.248 0.260 0.143 0.000 0.000 chr11 113792875 113880572
view USP29 207 77 42 24 0 0 0.802 0.298 0.163 0.093 0.000 0.000 chr19 57114985 57136926
view USP2 100 15 108 50 0 0 0.388 0.058 0.419 0.194 0.000 0.000 chr11 119350215 119386690
view USP30 197 74 49 24 0 0 0.764 0.287 0.190 0.093 0.000 0.000 chr12 109047576 109093023
view USP31 121 26 106 62 0 0 0.469 0.101 0.411 0.240 0.000 0.000 chr16 23056406 23154452
view USP32 75 12 142 74 0 0 0.291 0.047 0.550 0.287 0.000 0.000 chr17 60172327 60397133
view USP33 158 55 75 37 0 0 0.612 0.213 0.291 0.143 0.000 0.000 chr1 77690987 77764852
view USP34 155 52 76 39 0 0 0.601 0.202 0.295 0.151 0.000 0.000 chr2 61182463 61476087
view USP35 207 72 41 24 0 0 0.802 0.279 0.159 0.093 0.000 0.000 chr11 78183919 78220232
view USP36 192 64 53 32 0 0 0.744 0.248 0.205 0.124 0.000 0.000 chr17 78790652 78845814
view USP37 140 46 100 52 0 0 0.543 0.178 0.388 0.202 0.000 0.000 chr2 218445251 218573351
view USP38 128 27 123 74 0 0 0.496 0.105 0.477 0.287 0.000 0.000 chr4 143179917 143228874
view USP39 174 58 64 33 0 0 0.674 0.225 0.248 0.128 0.000 0.000 chr2 85611186 85654283
view USP3 116 15 121 80 0 0 0.450 0.058 0.469 0.310 0.000 0.000 chr15 63499593 63599633
view USP40 161 53 69 35 0 0 0.624 0.205 0.267 0.136 0.000 0.000 chr2 233470526 233571782
view USP42 196 62 46 33 0 0 0.760 0.240 0.178 0.128 0.000 0.000 chr7 6099949 6166564
view USP43 164 56 70 38 0 0 0.636 0.217 0.271 0.147 0.000 0.000 chr17 9640517 9734687
view USP44 200 73 41 23 0 0 0.775 0.283 0.159 0.089 0.000 0.000 chr12 95511560 95556476
view USP45 202 72 52 32 0 0 0.783 0.279 0.202 0.124 0.000 0.000 chr6 99427325 99520423
view USP46 95 22 133 65 0 0 0.368 0.085 0.516 0.252 0.000 0.000 chr4 52585960 52664301
view USP47 192 65 54 30 0 0 0.744 0.252 0.209 0.116 0.000 0.000 chr11 11836972 11966887
view USP48 181 56 57 40 0 0 0.702 0.217 0.221 0.155 0.000 0.000 chr1 21673298 21788149
view USP49 191 60 53 35 0 0 0.740 0.233 0.205 0.136 0.000 0.000 chr6 41784896 41900375
view USP4 112 21 119 69 0 0 0.434 0.081 0.461 0.267 0.000 0.000 chr3 49272144 49345053