Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view VKORC1L1 174 57 70 41 0 0 0.674 0.221 0.271 0.159 0.000 0.000 chr7 65868074 65964558
view VKORC1 154 34 98 65 0 0 0.597 0.132 0.380 0.252 0.000 0.000 chr16 31085854 31099797
view VLDLR 195 62 48 29 0 0 0.756 0.240 0.186 0.112 0.000 0.000 chr9 2616787 2665056
view VMA21 79 17 172 82 0 0 0.306 0.066 0.667 0.318 0.000 0.000 chrX 151392206 151414364
view VMAC 192 60 60 39 1 1 0.744 0.233 0.233 0.151 0.004 0.004 chr19 5899872 5915853
view VMO1 221 81 32 21 2 0 0.857 0.314 0.124 0.081 0.008 0.000 chr17 4780285 4791364
view VMP1 142 42 99 56 0 0 0.550 0.163 0.384 0.217 0.000 0.000 chr17 59702654 59847255
view VN1R1 214 78 40 24 2 1 0.829 0.302 0.155 0.093 0.008 0.004 chr19 57449790 57462140
view VN1R2 228 83 29 22 1 0 0.884 0.322 0.112 0.085 0.004 0.000 chr19 53253292 53264602
view VN1R4 227 85 26 17 1 0 0.880 0.329 0.101 0.066 0.004 0.000 chr19 53261676 53272723
view VNN1 208 71 44 31 0 0 0.806 0.275 0.171 0.120 0.000 0.000 chr6 132675849 132719055
view VNN2 217 73 35 26 0 0 0.841 0.283 0.136 0.101 0.000 0.000 chr6 132738870 132762904
view VOPP1 158 48 73 40 0 0 0.612 0.186 0.283 0.155 0.000 0.000 chr7 55465613 55577502
view VPREB1 221 78 36 26 0 0 0.857 0.302 0.140 0.101 0.000 0.000 chr22 22239786 22250515
view VPREB3 216 76 39 27 1 0 0.837 0.295 0.151 0.105 0.004 0.000 chr22 23747743 23759425
view VPS11 177 45 72 52 0 0 0.686 0.174 0.279 0.202 0.000 0.000 chr11 119062818 119086972
view VPS13A 173 65 68 32 0 0 0.671 0.252 0.264 0.124 0.000 0.000 chr9 77172534 77426537
view VPS13B 66 13 96 50 0 0 0.256 0.050 0.372 0.194 0.000 0.000 chr8 99008274 99882580
view VPS13C 175 63 65 36 0 0 0.678 0.244 0.252 0.140 0.000 0.000 chr15 61847389 62065447
view VPS13D 76 18 119 53 0 0 0.295 0.070 0.461 0.205 0.000 0.000 chr1 12225030 12517047
view VPS16 203 76 48 23 0 0 0.787 0.295 0.186 0.089 0.000 0.000 chr20 2835745 2871732
view VPS18 202 69 53 33 1 1 0.783 0.267 0.205 0.128 0.004 0.004 chr15 40889450 40908975
view VPS25 146 27 101 68 0 0 0.566 0.105 0.391 0.264 0.000 0.000 chr17 42768449 42784599
view VPS26A 167 51 71 44 0 0 0.647 0.198 0.275 0.171 0.000 0.000 chr10 69119178 69179412
view VPS26B 214 76 40 25 0 0 0.829 0.295 0.155 0.097 0.000 0.000 chr11 134219671 134252788
view VPS26C 197 64 49 32 0 0 0.764 0.248 0.190 0.124 0.000 0.000 chr21 37218422 37272334
view VPS28 203 70 53 33 0 0 0.787 0.271 0.205 0.128 0.000 0.000 chr8 144418617 144433548
view VPS29 154 38 96 60 0 0 0.597 0.147 0.372 0.233 0.000 0.000 chr12 110486083 110507111
view VPS33A 172 50 79 50 0 0 0.667 0.194 0.306 0.194 0.000 0.000 chr12 122224564 122271494
view VPS33B 186 59 58 35 0 0 0.721 0.229 0.225 0.136 0.000 0.000 chr15 90993673 91027594
view VPS35L 141 35 67 36 0 0 0.547 0.136 0.260 0.140 0.000 0.000 chr16 19550703 19706163
view VPS35 109 17 126 75 0 0 0.422 0.066 0.488 0.291 0.000 0.000 chr16 46651132 46694178
view VPS36 168 49 85 52 0 0 0.651 0.190 0.329 0.202 0.000 0.000 chr13 52407606 52455634
view VPS37A 191 63 57 36 0 0 0.740 0.244 0.221 0.140 0.000 0.000 chr8 17241958 17303024
view VPS37B 132 31 104 55 0 0 0.512 0.120 0.403 0.213 0.000 0.000 chr12 122860330 122901124
view VPS37C 105 4 135 87 0 0 0.407 0.016 0.523 0.337 0.000 0.000 chr11 61125257 61166426
view VPS37D 189 60 65 41 0 0 0.733 0.233 0.252 0.159 0.000 0.000 chr7 73662831 73677110
view VPS39 167 51 73 39 0 0 0.647 0.198 0.283 0.151 0.000 0.000 chr15 42153701 42213304
view VPS41 138 33 95 57 0 0 0.535 0.128 0.368 0.221 0.000 0.000 chr7 38717974 38914191
view VPS45 87 9 140 79 0 0 0.337 0.035 0.543 0.306 0.000 0.000 chr1 150062776 150150329
view VPS4A 182 53 69 46 0 0 0.705 0.205 0.267 0.178 0.000 0.000 chr16 69306350 69331939
view VPS4B 192 67 57 35 0 0 0.744 0.260 0.221 0.136 0.000 0.000 chr18 63384190 63427476
view VPS50 157 59 81 38 0 0 0.609 0.229 0.314 0.147 0.000 0.000 chr7 93227366 93366123
view VPS51 174 48 74 48 0 0 0.674 0.186 0.287 0.186 0.000 0.000 chr11 65091214 65116862
view VPS52 162 50 84 45 0 0 0.628 0.194 0.326 0.174 0.000 0.000 chr6 33245278 33276876
view VPS53 115 42 107 48 0 0 0.446 0.163 0.415 0.186 0.000 0.000 chr17 503668 719839
view VPS54 151 30 85 61 0 0 0.585 0.116 0.329 0.236 0.000 0.000 chr2 63887150 64024428
view VPS72 203 71 49 31 0 0 0.787 0.275 0.190 0.120 0.000 0.000 chr1 151171304 151195197
view VPS8 136 41 96 50 0 0 0.527 0.159 0.372 0.194 0.000 0.000 chr3 184807166 185057604
view VPS9D1 214 69 36 28 0 0 0.829 0.267 0.140 0.109 0.000 0.000 chr16 89702134 89725898