Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view PNPLA3 209 70 41 28 0 0 0.810 0.271 0.159 0.109 0.000 0.000 chr22 43918805 43952582
view PNPLA4 104 38 151 65 0 0 0.403 0.147 0.585 0.252 0.000 0.000 chrX 7893247 7932413
view PNPLA5 218 79 36 23 0 0 0.845 0.306 0.140 0.089 0.000 0.000 chr22 43874678 43897013
view PNPLA6 207 70 46 31 0 0 0.802 0.271 0.178 0.120 0.000 0.000 chr19 7530717 7566764
view PNPLA7 93 12 100 50 0 0 0.360 0.047 0.388 0.194 0.000 0.000 chr9 137454952 137555402
view PNPLA8 194 72 58 29 0 0 0.752 0.279 0.225 0.112 0.000 0.000 chr7 108465417 108531135
view PNPO 189 62 66 41 0 0 0.733 0.240 0.256 0.159 0.000 0.000 chr17 47936571 47954308
view PNPT1 194 65 52 33 0 0 0.752 0.252 0.202 0.128 0.000 0.000 chr2 55629061 55698844
view PNP 223 85 32 19 2 0 0.864 0.329 0.124 0.074 0.008 0.000 chr14 20464406 20482089
view PNRC1 197 62 60 42 0 0 0.764 0.240 0.233 0.163 0.000 0.000 chr6 89075751 89090160
view PNRC2 205 77 52 27 0 0 0.795 0.298 0.202 0.105 0.000 0.000 chr1 23954828 23968462
view POC1A 142 46 87 43 0 0 0.550 0.178 0.337 0.167 0.000 0.000 chr3 52070226 52159423
view POC1B 184 65 63 36 0 0 0.713 0.252 0.244 0.140 0.000 0.000 chr12 89414718 89531047
view POC5 189 71 59 28 0 0 0.733 0.275 0.229 0.109 0.000 0.000 chr5 75669124 75722437
view PODNL1 215 72 36 26 0 0 0.833 0.279 0.140 0.101 0.000 0.000 chr19 13926187 13943417
view PODN 200 71 47 26 0 0 0.775 0.275 0.182 0.101 0.000 0.000 chr1 53057213 53090494
view PODXL2 200 63 48 34 0 0 0.775 0.244 0.186 0.132 0.000 0.000 chr3 127624185 127677802
view PODXL 219 77 30 22 0 0 0.849 0.298 0.116 0.085 0.000 0.000 chr7 131495271 131561628
view POF1B 48 9 188 83 0 0 0.186 0.035 0.729 0.322 0.000 0.000 chrX 85272396 85384665
view POFUT1 160 51 89 48 0 0 0.620 0.198 0.345 0.186 0.000 0.000 chr20 32202880 32243658
view POFUT2 217 79 35 23 0 0 0.841 0.306 0.136 0.089 0.000 0.000 chr21 45258935 45292895
view POGK 203 70 52 33 0 0 0.787 0.271 0.202 0.128 0.000 0.000 chr1 166834475 166861359
view POGLUT1 210 75 48 30 0 0 0.814 0.291 0.186 0.116 0.000 0.000 chr3 119463963 119499708
view POGLUT2 217 80 40 24 0 0 0.841 0.310 0.155 0.093 0.000 0.000 chr13 102779281 102803976
view POGLUT3 171 53 72 43 0 0 0.663 0.205 0.279 0.167 0.000 0.000 chr11 108467116 108503384
view POGZ 159 53 82 43 0 0 0.616 0.205 0.318 0.167 0.000 0.000 chr1 151397724 151464494
view POLA1 36 0 190 84 0 0 0.140 0.000 0.736 0.326 0.000 0.000 chrX 24688918 25001986
view POLA2 141 36 99 57 0 0 0.547 0.140 0.384 0.221 0.000 0.000 chr11 65256962 65303685
view POLB 156 45 76 44 0 0 0.605 0.174 0.295 0.171 0.000 0.000 chr8 42333494 42376808
view POLD1 167 35 76 58 0 0 0.647 0.136 0.295 0.225 0.000 0.000 chr19 50379347 50423014
view POLD2 209 75 42 26 0 0 0.810 0.291 0.163 0.101 0.000 0.000 chr7 44109680 44128548
view POLD3 199 74 54 29 0 0 0.771 0.287 0.209 0.112 0.000 0.000 chr11 74587582 74648076
view POLD4 156 47 100 57 0 0 0.605 0.182 0.388 0.221 0.000 0.000 chr11 67345772 67358546
view POLDIP2 169 46 85 55 0 0 0.655 0.178 0.329 0.213 0.000 0.000 chr17 28341633 28362527
view POLDIP3 179 55 67 43 0 0 0.694 0.213 0.260 0.167 0.000 0.000 chr22 42578721 42619883
view POLE2 116 16 113 70 0 0 0.450 0.062 0.438 0.271 0.000 0.000 chr14 49638555 49693214
view POLE3 177 46 76 54 0 0 0.686 0.178 0.295 0.209 0.000 0.000 chr9 113402235 113415675
view POLE4 237 96 19 8 1 1 0.919 0.372 0.074 0.031 0.004 0.004 chr2 74953643 74975128
view POLE 145 37 83 49 0 0 0.562 0.143 0.322 0.190 0.000 0.000 chr12 132618762 132692342
view POLG2 162 46 91 56 0 0 0.628 0.178 0.353 0.217 0.000 0.000 chr17 64472785 64502054
view POLG 198 62 50 33 0 0 0.767 0.240 0.194 0.128 0.000 0.000 chr15 89311320 89339824
view POLH 130 27 107 65 0 0 0.504 0.105 0.415 0.252 0.000 0.000 chr6 43571185 43625523
view POLI 168 48 82 53 0 0 0.651 0.186 0.318 0.205 0.000 0.000 chr18 54264517 54303234
view POLK 177 65 63 31 0 0 0.686 0.252 0.244 0.120 0.000 0.000 chr5 75506891 75614991
view POLL 196 64 59 38 0 0 0.760 0.248 0.229 0.147 0.000 0.000 chr10 101573882 101593257
view POLM 196 62 61 43 0 0 0.760 0.240 0.236 0.167 0.000 0.000 chr7 44067062 44087530
view POLN 96 26 113 56 0 0 0.372 0.101 0.438 0.217 0.000 0.000 chr4 2066918 2247121
view POLQ 159 39 78 53 0 0 0.616 0.151 0.302 0.205 0.000 0.000 chr3 121426431 121550988
view POLR1A 169 60 74 36 0 0 0.655 0.233 0.287 0.140 0.000 0.000 chr2 86015216 86110886
view POLR1B 191 68 59 31 0 0 0.740 0.264 0.229 0.120 0.000 0.000 chr2 112537465 112584818