Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view POPDC2 204 76 49 26 0 0 0.791 0.295 0.190 0.101 0.000 0.000 chr3 119637056 119665589
view POPDC3 128 40 112 55 0 0 0.496 0.155 0.434 0.213 0.000 0.000 chr6 105152900 105185014
view PORCN 82 23 172 78 0 0 0.318 0.089 0.667 0.302 0.000 0.000 chrX 48503992 48525808
view POR 138 31 73 41 0 0 0.535 0.120 0.283 0.159 0.000 0.000 chr7 75910155 75991855
view POSTN 207 76 48 27 0 0 0.802 0.295 0.186 0.105 0.000 0.000 chr13 37557585 37603768
view POT1 172 58 66 38 0 0 0.667 0.225 0.256 0.147 0.000 0.000 chr7 124817386 124934825
view POTEB2 2 1 42 7 0 0 0.008 0.004 0.163 0.027 0.000 0.000 chr15 20830372 20871314
view POTEB3 26 6 91 31 2 1 0.101 0.023 0.353 0.120 0.008 0.004 chr15 21400401 21445499
view POTEB 32 5 126 52 4 1 0.124 0.019 0.488 0.202 0.016 0.004 chr15 21841329 21882735
view POTEC 193 68 51 30 1 0 0.748 0.264 0.198 0.116 0.004 0.000 chr18 14502339 14548600
view POTED 207 80 42 20 0 0 0.802 0.310 0.163 0.078 0.000 0.000 chr21 13604777 13650823
view POTEE 143 33 90 56 0 0 0.554 0.128 0.349 0.217 0.000 0.000 chr2 131204536 131270278
view POTEF 82 13 105 52 0 0 0.318 0.050 0.407 0.202 0.000 0.000 chr2 130068535 130134222
view POTEG 55 10 104 49 35 5 0.213 0.039 0.403 0.190 0.136 0.019 chr14 19397486 19439341
view POTEH 1 0 31 6 0 0 0.004 0.000 0.120 0.023 0.000 0.000 chr22 15685026 15726631
view POTEI 62 13 133 58 0 0 0.240 0.050 0.516 0.225 0.000 0.000 chr2 130454455 130514328
view POTEJ 65 18 118 46 4 0 0.252 0.070 0.457 0.178 0.016 0.000 chr2 130606440 130663037
view POTEM 33 12 123 53 2 0 0.128 0.047 0.477 0.205 0.008 0.000 chr14 18962434 19008752
view POU1F1 209 78 45 24 0 0 0.810 0.302 0.174 0.093 0.000 0.000 chr3 87254404 87281584
view POU2AF1 191 71 60 31 0 0 0.740 0.275 0.233 0.120 0.000 0.000 chr11 111347255 111384275
view POU2AF2 189 68 53 30 0 0 0.733 0.264 0.205 0.116 0.000 0.000 chr11 111240725 111291401
view POU2AF3 233 91 23 12 1 1 0.903 0.353 0.089 0.047 0.004 0.004 chr11 111293546 111313735
view POU2F1 145 43 96 56 0 0 0.562 0.167 0.372 0.217 0.000 0.000 chr1 167215886 167432340
view POU2F2 87 10 141 77 0 0 0.337 0.039 0.547 0.298 0.000 0.000 chr19 42081110 42137446
view POU2F3 159 40 66 45 0 0 0.616 0.155 0.256 0.174 0.000 0.000 chr11 120235140 120324945
view POU3F1 194 63 63 42 1 0 0.752 0.244 0.244 0.163 0.004 0.000 chr1 38038829 38051793
view POU3F2 217 77 39 27 0 0 0.841 0.298 0.151 0.105 0.000 0.000 chr6 98829574 98844458
view POU3F3 202 68 53 34 0 0 0.783 0.264 0.205 0.132 0.000 0.000 chr2 104849115 104863574
view POU3F4 85 25 166 75 1 0 0.329 0.097 0.643 0.291 0.004 0.000 chrX 83503290 83517127
view POU4F1 215 77 41 27 0 0 0.833 0.298 0.159 0.105 0.000 0.000 chr13 78593362 78608552
view POU4F2 206 76 49 27 1 0 0.798 0.295 0.190 0.105 0.004 0.000 chr4 146633893 146647474
view POU4F3 175 51 79 51 0 0 0.678 0.198 0.306 0.198 0.000 0.000 chr5 146333839 146346728
view POU5F1B 219 83 38 22 0 0 0.849 0.322 0.147 0.085 0.000 0.000 chr8 127410867 127421946
view POU5F1 222 79 34 24 1 1 0.860 0.306 0.132 0.093 0.004 0.004 chr6 31159337 31175682
view POU5F2 186 72 68 32 0 0 0.721 0.279 0.264 0.124 0.000 0.000 chr5 93728220 93746600
view POU6F1 219 80 31 19 0 0 0.849 0.310 0.120 0.074 0.000 0.000 chr12 51181936 51223062
view POU6F2 84 14 82 53 0 0 0.326 0.054 0.318 0.205 0.000 0.000 chr7 38972909 39473601
view PP2D1 197 60 50 36 0 0 0.764 0.233 0.194 0.140 0.000 0.000 chr3 19980346 20017264
view PPA1 203 63 48 37 0 0 0.787 0.244 0.186 0.143 0.000 0.000 chr10 70197835 70238429
view PPA2 182 59 60 33 0 0 0.705 0.229 0.233 0.128 0.000 0.000 chr4 105364077 105479062
view PPAN 220 73 36 30 0 0 0.853 0.283 0.140 0.116 0.000 0.000 chr19 10101362 10117012
view PPARA 99 12 104 61 0 0 0.384 0.047 0.403 0.236 0.000 0.000 chr22 46145526 46248755
view PPARD 118 26 110 61 0 0 0.457 0.101 0.426 0.236 0.000 0.000 chr6 35337558 35433178
view PPARGC1A 170 52 50 31 0 0 0.659 0.202 0.194 0.120 0.000 0.000 chr4 23787021 23895047
view PPARGC1B 159 46 60 34 0 0 0.616 0.178 0.233 0.132 0.000 0.000 chr5 149725310 149860022
view PPARG 146 43 88 50 0 0 0.566 0.167 0.341 0.194 0.000 0.000 chr3 12284070 12439344
view PPAT 191 78 61 24 0 0 0.740 0.302 0.236 0.093 0.000 0.000 chr4 56388362 56440615
view PPBP 183 63 71 40 1 0 0.709 0.244 0.275 0.155 0.004 0.000 chr4 73981439 73993190
view PPCDC 198 74 52 26 0 0 0.767 0.287 0.202 0.101 0.000 0.000 chr15 75018590 75055726
view PPCS 197 67 60 37 0 0 0.764 0.260 0.233 0.143 0.000 0.000 chr1 42451543 42466236