Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view POLR1C 189 67 65 35 0 0 0.733 0.260 0.252 0.136 0.000 0.000 chr6 43512089 43526513
view POLR1D 218 82 37 20 0 0 0.845 0.318 0.143 0.078 0.000 0.000 chr13 27616892 27628449
view POLR1E 203 68 44 28 0 0 0.787 0.264 0.171 0.109 0.000 0.000 chr9 37480948 37508697
view POLR1F 214 79 37 20 0 0 0.829 0.306 0.143 0.078 0.000 0.000 chr7 19690461 19714037
view POLR1G 202 65 55 39 0 0 0.783 0.252 0.213 0.151 0.000 0.000 chr19 45401644 45415737
view POLR1H 222 83 36 22 0 0 0.860 0.322 0.140 0.085 0.000 0.000 chr6 30056265 30069907
view POLR2B 190 62 61 37 0 0 0.736 0.240 0.236 0.143 0.000 0.000 chr4 56973896 57036158
view POLR2C 194 70 61 33 1 0 0.752 0.271 0.236 0.128 0.004 0.000 chr16 57457679 57477009
view POLR2D 178 55 75 47 0 0 0.690 0.213 0.291 0.182 0.000 0.000 chr2 127838553 127863155
view POLR2E 220 72 33 28 0 0 0.853 0.279 0.128 0.109 0.000 0.000 chr19 1081574 1100375
view POLR2F 201 70 52 31 1 0 0.779 0.271 0.202 0.120 0.004 0.000 chr22 37948699 37974312
view POLR2G 183 59 70 42 0 0 0.709 0.229 0.271 0.163 0.000 0.000 chr11 62756580 62771710
view POLR2H 215 73 37 26 0 0 0.833 0.283 0.143 0.101 0.000 0.000 chr3 184356710 184373591
view POLR2I 218 77 36 25 1 0 0.845 0.298 0.140 0.097 0.004 0.000 chr19 36108709 36119875
view POLR2J2 26 5 67 24 4 0 0.101 0.019 0.260 0.093 0.016 0.000 chr7 102661046 102676663
view POLR2J3 34 27 11 10 211 66 0.132 0.105 0.043 0.039 0.818 0.256 chr7 102561966 102577583
view POLR2J 204 69 48 32 0 0 0.791 0.267 0.186 0.124 0.000 0.000 chr7 102468128 102483922
view POLR2K 214 74 41 29 0 0 0.829 0.287 0.159 0.112 0.000 0.000 chr8 100145636 100159003
view POLR2L 217 72 35 27 0 0 0.841 0.279 0.136 0.105 0.000 0.000 chr11 834721 847529
view POLR2M 201 73 46 27 0 0 0.779 0.283 0.178 0.105 0.000 0.000 chr15 57701714 57722557
view POLR3A 186 67 57 27 0 0 0.721 0.260 0.221 0.105 0.000 0.000 chr10 77970149 78034515
view POLR3B 151 36 88 55 0 0 0.585 0.140 0.341 0.213 0.000 0.000 chr12 106352748 106515198
view POLR3C 183 60 67 39 1 0 0.709 0.233 0.260 0.151 0.004 0.000 chr1 145819200 145849402
view POLR3D 215 76 38 25 0 0 0.833 0.295 0.147 0.097 0.000 0.000 chr8 22240133 22259601
view POLR3E 178 53 66 40 0 0 0.690 0.205 0.256 0.155 0.000 0.000 chr16 22292409 22340096
view POLR3F 225 80 28 21 0 0 0.872 0.310 0.109 0.081 0.000 0.000 chr20 18462390 18489646
view POLR3GL 185 60 68 42 0 0 0.717 0.233 0.264 0.163 0.000 0.000 chr1 145959690 145983848
view POLR3G 182 58 64 38 0 0 0.705 0.225 0.248 0.147 0.000 0.000 chr5 90469864 90519557
view POLR3H 191 60 59 38 0 0 0.740 0.233 0.229 0.147 0.000 0.000 chr22 41520799 41549470
view POLR3K 216 74 40 29 0 0 0.837 0.287 0.155 0.112 0.000 0.000 chr16 41407 58608
view POLRMT 210 67 37 28 0 0 0.814 0.260 0.143 0.109 0.000 0.000 chr19 612221 638537
view POM121C 153 30 85 63 0 0 0.593 0.116 0.329 0.244 0.000 0.000 chr7 75411786 75491299
view POM121L12 215 75 37 28 5 1 0.833 0.291 0.143 0.109 0.019 0.004 chr7 53030633 53041925
view POM121L2 213 80 42 22 0 0 0.826 0.310 0.163 0.085 0.000 0.000 chr6 27303377 27317273
view POM121 211 72 34 23 0 0 0.818 0.279 0.132 0.089 0.000 0.000 chr7 72920095 72953299
view POMC 209 74 44 27 1 0 0.810 0.287 0.171 0.105 0.004 0.000 chr2 25155860 25173580
view POMGNT1 202 75 55 29 0 0 0.783 0.291 0.213 0.112 0.000 0.000 chr1 46183683 46203434
view POMGNT2 188 62 59 35 0 0 0.729 0.240 0.229 0.136 0.000 0.000 chr3 43074234 43111079
view POMK 137 33 100 55 0 0 0.531 0.128 0.388 0.213 0.000 0.000 chr8 43088515 43128434
view POMP 215 76 39 26 0 0 0.833 0.295 0.151 0.101 0.000 0.000 chr13 28654130 28683959
view POMT1 166 42 76 53 0 0 0.643 0.163 0.295 0.205 0.000 0.000 chr9 131497918 131528799
view POMT2 198 70 48 24 0 0 0.767 0.271 0.186 0.093 0.000 0.000 chr14 77269956 77325883
view POMZP3 211 72 42 31 1 0 0.818 0.279 0.163 0.120 0.004 0.000 chr7 76604986 76632279
view PON1 216 80 38 22 0 0 0.837 0.310 0.147 0.085 0.000 0.000 chr7 95292676 95329532
view PON2 198 68 50 28 0 0 0.767 0.264 0.194 0.109 0.000 0.000 chr7 95399862 95440028
view PON3 185 64 65 38 0 0 0.717 0.248 0.252 0.147 0.000 0.000 chr7 95354872 95401375
view POP1 210 72 37 26 0 0 0.814 0.279 0.143 0.101 0.000 0.000 chr8 98112293 98164835
view POP4 230 85 25 17 1 1 0.891 0.329 0.097 0.066 0.004 0.004 chr19 29601283 29622237
view POP5 195 63 59 39 2 1 0.756 0.244 0.229 0.151 0.008 0.004 chr12 120573764 120586402
view POP7 190 60 61 39 1 1 0.736 0.233 0.236 0.151 0.004 0.004 chr7 100701121 100712486