Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SLC51B 168 43 85 59 0 0 0.651 0.167 0.329 0.229 0.000 0.000 chr15 65040387 65058397
view SLC52A1 211 73 37 22 0 0 0.818 0.283 0.143 0.085 0.000 0.000 chr17 5027602 5040426
view SLC52A2 192 59 57 37 0 0 0.744 0.229 0.221 0.143 0.000 0.000 chr8 144353613 144366272
view SLC52A3 232 87 24 17 1 0 0.899 0.337 0.093 0.066 0.004 0.000 chr20 755080 773500
view SLC5A10 176 49 47 32 0 0 0.682 0.190 0.182 0.124 0.000 0.000 chr17 18947165 19027565
view SLC5A11 188 66 47 23 0 0 0.729 0.256 0.182 0.089 0.000 0.000 chr16 24840963 24916626
view SLC5A12 205 72 42 25 0 0 0.795 0.279 0.163 0.097 0.000 0.000 chr11 26662020 26727060
view SLC5A1 125 23 109 69 0 0 0.484 0.089 0.422 0.267 0.000 0.000 chr22 32038261 32118029
view SLC5A2 202 69 54 34 0 0 0.783 0.267 0.209 0.132 0.000 0.000 chr16 31478123 31495769
view SLC5A3 171 51 78 49 0 0 0.663 0.198 0.302 0.190 0.000 0.000 chr21 34068578 34111260
view SLC5A4 150 28 94 67 0 0 0.581 0.109 0.364 0.260 0.000 0.000 chr22 32213464 32260347
view SLC5A5 206 66 42 29 0 0 0.798 0.256 0.163 0.112 0.000 0.000 chr19 17866945 17900174
view SLC5A6 155 41 100 62 0 0 0.601 0.159 0.388 0.240 0.000 0.000 chr2 27194587 27217268
view SLC5A7 187 57 63 44 0 0 0.725 0.221 0.244 0.171 0.000 0.000 chr2 107981524 108018994
view SLC5A8 187 67 63 35 0 0 0.725 0.260 0.244 0.136 0.000 0.000 chr12 101150493 101215238
view SLC5A9 209 72 38 26 1 1 0.810 0.279 0.147 0.101 0.004 0.004 chr1 48217716 48253638
view SLC66A1 227 83 29 20 0 0 0.880 0.322 0.112 0.078 0.000 0.000 chr1 19307326 19334300
view SLC66A2 175 52 68 43 0 0 0.678 0.202 0.264 0.167 0.000 0.000 chr18 79897420 79956653
view SLC66A3 201 61 51 39 0 0 0.779 0.236 0.198 0.151 0.000 0.000 chr2 11150467 11183856
view SLC6A11 180 62 52 27 0 0 0.698 0.240 0.202 0.105 0.000 0.000 chr3 10811228 10945714
view SLC6A12 209 68 43 31 0 0 0.810 0.264 0.167 0.120 0.000 0.000 chr12 185081 219157
view SLC6A13 220 81 21 14 0 0 0.853 0.314 0.081 0.054 0.000 0.000 chr12 215622 267836
view SLC6A14 89 27 162 72 0 0 0.345 0.105 0.628 0.279 0.000 0.000 chrX 116431606 116466458
view SLC6A15 108 12 126 78 0 0 0.419 0.047 0.488 0.302 0.000 0.000 chr12 84854491 84917799
view SLC6A16 168 60 79 38 0 0 0.651 0.233 0.306 0.147 0.000 0.000 chr19 49284638 49330191
view SLC6A17 163 45 64 43 0 0 0.632 0.174 0.248 0.167 0.000 0.000 chr1 110145494 110207202
view SLC6A18 227 78 25 21 0 0 0.880 0.302 0.097 0.081 0.000 0.000 chr5 1220381 1251189
view SLC6A19 228 83 28 20 0 0 0.884 0.322 0.109 0.078 0.000 0.000 chr5 1196595 1230111
view SLC6A1 218 84 29 15 0 0 0.845 0.326 0.112 0.058 0.000 0.000 chr3 10987748 11044247
view SLC6A20 198 62 44 30 0 0 0.767 0.240 0.171 0.116 0.000 0.000 chr3 45750449 45801536
view SLC6A2 198 69 38 20 0 0 0.767 0.267 0.147 0.078 0.000 0.000 chr16 55650988 55711192
view SLC6A3 186 49 52 40 0 0 0.721 0.190 0.202 0.155 0.000 0.000 chr5 1387794 1450440
view SLC6A4 142 28 94 63 0 0 0.550 0.109 0.364 0.244 0.000 0.000 chr17 30189319 30240697
view SLC6A5 176 46 59 44 0 0 0.682 0.178 0.229 0.171 0.000 0.000 chr11 20594608 20664285
view SLC6A6 187 51 44 32 0 0 0.725 0.198 0.171 0.124 0.000 0.000 chr3 14397606 14494349
view SLC6A7 233 86 23 17 0 0 0.903 0.333 0.089 0.066 0.000 0.000 chr5 150185062 150216063
view SLC6A8 83 15 164 82 1 0 0.322 0.058 0.636 0.318 0.004 0.000 chrX 153682926 153701588
view SLC6A9 193 68 49 25 0 0 0.748 0.264 0.190 0.097 0.000 0.000 chr1 43991483 44036462
view SLC7A10 204 62 46 37 1 0 0.791 0.240 0.178 0.143 0.004 0.000 chr19 33203664 33230850
view SLC7A11 181 62 54 30 0 0 0.702 0.240 0.209 0.116 0.000 0.000 chr4 138159097 138247349
view SLC7A13 213 78 40 23 0 0 0.826 0.302 0.155 0.089 0.000 0.000 chr8 86209063 86235381
view SLC7A14 153 43 71 42 0 0 0.593 0.167 0.275 0.163 0.000 0.000 chr3 170454548 170591075
view SLC7A1 164 43 71 49 0 0 0.636 0.167 0.275 0.190 0.000 0.000 chr13 29504414 29600688
view SLC7A2 224 80 23 19 0 0 0.868 0.310 0.089 0.074 0.000 0.000 chr8 17492088 17575566
view SLC7A3 96 27 144 67 0 0 0.372 0.105 0.558 0.260 0.000 0.000 chrX 70920579 70936096
view SLC7A4 220 76 35 26 0 0 0.853 0.295 0.136 0.101 0.000 0.000 chr22 21023718 21037561
view SLC7A5 194 51 49 41 0 0 0.752 0.198 0.190 0.159 0.000 0.000 chr16 87825023 87874507
view SLC7A6OS 163 33 89 67 0 0 0.632 0.128 0.345 0.260 0.000 0.000 chr16 68293034 68315946
view SLC7A6 140 32 104 65 0 0 0.543 0.124 0.403 0.252 0.000 0.000 chr16 68259526 68306819
view SLC7A7 200 62 40 28 0 0 0.775 0.240 0.155 0.109 0.000 0.000 chr14 22768222 22820435