Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SMDT1 196 66 59 36 0 0 0.760 0.256 0.229 0.140 0.000 0.000 chr22 42074700 42089284
view SMG1 149 38 83 47 0 0 0.578 0.147 0.322 0.182 0.000 0.000 chr16 18799860 18931408
view SMG5 183 60 65 37 0 0 0.709 0.233 0.252 0.143 0.000 0.000 chr1 156244224 156287825
view SMG6 138 32 91 55 0 0 0.535 0.124 0.353 0.213 0.000 0.000 chr17 2054843 2308785
view SMG7 179 63 65 35 0 0 0.694 0.244 0.252 0.136 0.000 0.000 chr1 183467499 183559191
view SMG8 196 67 60 36 0 0 0.760 0.260 0.233 0.140 0.000 0.000 chr17 59205035 59220230
view SMG9 159 44 89 54 0 0 0.616 0.171 0.345 0.209 0.000 0.000 chr19 43722983 43759962
view SMIM10L1 198 69 57 34 0 0 0.767 0.267 0.221 0.132 0.000 0.000 chr12 11166194 11181016
view SMIM10L2A 85 26 170 76 0 0 0.329 0.101 0.659 0.295 0.000 0.000 chrX 135416944 135433075
view SMIM10L2B 86 24 169 79 0 0 0.333 0.093 0.655 0.306 0.000 0.000 chrX 135089985 135103712
view SMIM10 95 31 158 72 2 0 0.368 0.120 0.612 0.279 0.008 0.000 chrX 134985991 134997473
view SMIM11 64 5 76 16 0 0 0.248 0.019 0.295 0.062 0.000 0.000 chr21 34370507 34394151
view SMIM12 190 55 66 49 0 0 0.736 0.213 0.256 0.190 0.000 0.000 chr1 34845362 34864749
view SMIM13 199 67 56 35 0 0 0.771 0.260 0.217 0.136 0.000 0.000 chr6 11088834 11143733
view SMIM14 171 51 61 37 0 0 0.663 0.198 0.236 0.143 0.000 0.000 chr4 39541336 39643865
view SMIM15 182 57 74 47 0 0 0.705 0.221 0.287 0.182 0.000 0.000 chr5 61152704 61167468
view SMIM17 208 66 46 36 0 0 0.806 0.256 0.178 0.140 0.000 0.000 chr19 56638159 56662247
view SMIM18 214 78 43 27 1 0 0.829 0.302 0.167 0.105 0.004 0.000 chr8 30633580 30651064
view SMIM19 191 69 57 31 0 0 0.740 0.267 0.221 0.120 0.000 0.000 chr8 42536585 42560195
view SMIM1 209 64 46 38 0 0 0.810 0.248 0.178 0.147 0.000 0.000 chr1 3767749 3780956
view SMIM20 218 77 36 25 1 1 0.845 0.298 0.140 0.097 0.004 0.004 chr4 25909220 25934812
view SMIM21 215 79 39 25 0 0 0.833 0.306 0.151 0.097 0.000 0.000 chr18 75404476 75432703
view SMIM22 200 65 53 35 1 1 0.775 0.252 0.205 0.136 0.004 0.004 chr16 4790369 4801491
view SMIM23 214 76 38 25 1 1 0.829 0.295 0.147 0.097 0.004 0.004 chr5 171780817 171796136
view SMIM24 210 70 45 33 0 0 0.814 0.271 0.174 0.128 0.000 0.000 chr19 3468986 3485525
view SMIM26 219 75 37 28 0 0 0.849 0.291 0.143 0.109 0.000 0.000 chr20 18562432 18574560
view SMIM27 192 62 61 40 0 0 0.744 0.240 0.236 0.155 0.000 0.000 chr9 32547327 32558007
view SMIM28 186 60 70 44 0 0 0.721 0.233 0.271 0.171 0.000 0.000 chr6 138372905 138388486
view SMIM29 176 44 72 52 3 2 0.682 0.171 0.279 0.202 0.012 0.008 chr6 34241395 34254006
view SMIM2 189 58 57 36 0 0 0.733 0.225 0.221 0.140 0.000 0.000 chr13 44138150 44166257
view SMIM30 167 42 86 59 1 0 0.647 0.163 0.333 0.229 0.004 0.000 chr7 113111718 113123554
view SMIM31 181 61 58 32 0 0 0.702 0.236 0.225 0.124 0.000 0.000 chr4 164749131 164808795
view SMIM32 203 75 55 30 0 0 0.787 0.291 0.213 0.116 0.000 0.000 chr5 136186468 136198162
view SMIM33 207 75 49 28 0 0 0.802 0.291 0.190 0.109 0.000 0.000 chr5 139466004 139478700
view SMIM34 0 0 33 12 0 0 0.000 0.000 0.128 0.047 0.000 0.000 chr21 34413715 34428951
view SMIM35 203 69 45 28 0 0 0.787 0.267 0.174 0.109 0.000 0.000 chr11 117998634 118091963
view SMIM36 169 54 57 28 0 0 0.655 0.209 0.221 0.109 0.000 0.000 chr17 55444856 55516452
view SMIM38 218 79 39 25 1 1 0.845 0.306 0.151 0.097 0.004 0.004 chr11 69150935 69167440
view SMIM39 173 46 79 54 1 0 0.671 0.178 0.306 0.209 0.004 0.000 chr2 131030092 131040262
view SMIM3 202 65 50 36 0 0 0.783 0.252 0.194 0.140 0.000 0.000 chr5 150773757 150801734
view SMIM40 191 57 62 45 0 0 0.740 0.221 0.240 0.174 0.000 0.000 chr6 33318628 33334279
view SMIM41 190 59 55 35 0 0 0.736 0.229 0.213 0.136 0.000 0.000 chr12 52074704 52113255
view SMIM42 202 65 53 37 0 0 0.783 0.252 0.205 0.143 0.000 0.000 chr1 158122287 158133301
view SMIM43 218 80 35 21 1 1 0.845 0.310 0.136 0.081 0.004 0.004 chr4 121753930 121770164
view SMIM44 199 64 54 37 0 0 0.771 0.248 0.209 0.143 0.000 0.000 chr19 3477110 3488441
view SMIM45 190 62 64 40 0 0 0.736 0.240 0.248 0.155 0.000 0.000 chr22 41947150 41963939
view SMIM46 183 54 62 39 1 0 0.709 0.209 0.240 0.151 0.004 0.000 chr19 14107324 14117476
view SMIM47 175 40 61 46 0 0 0.678 0.155 0.236 0.178 0.000 0.000 chr19 50780728 50791160
view SMIM5 205 67 49 34 0 0 0.795 0.260 0.190 0.132 0.000 0.000 chr17 75628434 75646404
view SMIM6 207 74 45 26 0 0 0.802 0.287 0.174 0.101 0.000 0.000 chr17 75641251 75652974