Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SNX20 207 61 48 41 0 0 0.802 0.236 0.186 0.159 0.000 0.000 chr16 50666629 50686312
view SNX21 215 79 40 24 0 0 0.833 0.306 0.155 0.093 0.000 0.000 chr20 45828799 45848276
view SNX22 174 49 84 56 0 0 0.674 0.190 0.326 0.217 0.000 0.000 chr15 64146731 64162481
view SNX24 164 53 83 45 0 0 0.636 0.205 0.322 0.174 0.000 0.000 chr5 122840613 123014205
view SNX25 137 39 90 52 0 0 0.531 0.151 0.349 0.202 0.000 0.000 chr4 185204598 185368966
view SNX27 182 63 64 36 0 0 0.705 0.244 0.248 0.140 0.000 0.000 chr1 151607050 151704080
view SNX29 87 13 60 39 0 0 0.337 0.050 0.233 0.151 0.000 0.000 chr16 11971734 12579287
view SNX2 185 64 66 37 0 0 0.717 0.248 0.256 0.143 0.000 0.000 chr5 122770080 122839543
view SNX30 168 58 64 34 0 0 0.651 0.225 0.248 0.132 0.000 0.000 chr9 112745760 112879987
view SNX31 151 31 72 51 0 0 0.585 0.120 0.279 0.198 0.000 0.000 chr8 100567889 100654665
view SNX32 194 66 54 29 0 0 0.752 0.256 0.209 0.112 0.000 0.000 chr11 65828963 65858701
view SNX33 209 71 38 25 0 0 0.810 0.275 0.147 0.097 0.000 0.000 chr15 75642912 75667301
view SNX3 177 57 71 41 0 0 0.686 0.221 0.275 0.159 0.000 0.000 chr6 108206222 108266040
view SNX4 179 59 70 41 0 0 0.694 0.229 0.271 0.159 0.000 0.000 chr3 125441650 125525202
view SNX5 196 64 53 34 0 0 0.760 0.248 0.205 0.132 0.000 0.000 chr20 17936600 17973794
view SNX6 160 44 75 45 0 0 0.620 0.171 0.291 0.174 0.000 0.000 chr14 34556093 34635148
view SNX7 188 73 50 23 0 0 0.729 0.283 0.194 0.089 0.000 0.000 chr1 98656721 98765500
view SNX8 184 54 54 34 0 0 0.713 0.209 0.209 0.132 0.000 0.000 chr7 2246770 2319441
view SNX9 150 43 72 41 0 0 0.581 0.167 0.279 0.159 0.000 0.000 chr6 157818246 157950077
view SOAT1 190 60 55 37 0 0 0.736 0.233 0.213 0.143 0.000 0.000 chr1 179288797 179363680
view SOAT2 204 80 51 25 0 0 0.791 0.310 0.198 0.097 0.000 0.000 chr12 53098486 53129535
view SOBP 147 54 65 30 0 0 0.570 0.209 0.252 0.116 0.000 0.000 chr6 107485117 107666306
view SOCS1 215 78 40 26 1 0 0.833 0.302 0.155 0.101 0.004 0.000 chr16 11249417 11261204
view SOCS2 218 80 36 22 0 0 0.845 0.310 0.140 0.085 0.000 0.000 chr12 93567675 93581745
view SOCS3 233 85 22 17 1 1 0.903 0.329 0.085 0.066 0.004 0.004 chr17 78351778 78365077
view SOCS4 196 67 52 29 0 0 0.760 0.260 0.202 0.112 0.000 0.000 chr14 55022236 55054489
view SOCS5 189 67 64 35 0 0 0.733 0.260 0.248 0.136 0.000 0.000 chr2 46694295 46768129
view SOCS6 178 52 68 47 0 0 0.690 0.202 0.264 0.182 0.000 0.000 chr18 70284045 70335199
view SOCS7 144 36 84 46 0 0 0.558 0.140 0.326 0.178 0.000 0.000 chr17 38346844 38410593
view SOD1 212 72 42 31 0 0 0.822 0.279 0.163 0.120 0.000 0.000 chr21 31654693 31673931
view SOD2 181 51 67 45 0 0 0.702 0.198 0.260 0.174 0.000 0.000 chr6 159664069 159698241
view SOD3 232 84 21 16 0 0 0.899 0.326 0.081 0.062 0.000 0.000 chr4 24790573 24805842
view SOGA1 140 31 93 61 0 0 0.543 0.120 0.360 0.236 0.000 0.000 chr20 36772447 36868538
view SOGA3 172 53 70 44 1 1 0.667 0.205 0.271 0.171 0.004 0.004 chr6 127467974 127524335
view SOHLH1 208 66 45 34 0 0 0.806 0.256 0.174 0.132 0.000 0.000 chr9 135688407 135704481
view SOHLH2 209 76 44 25 0 0 0.810 0.295 0.171 0.097 0.000 0.000 chr13 36163217 36219556
view SON 181 63 68 36 0 0 0.702 0.244 0.264 0.140 0.000 0.000 chr21 33538038 33582481
view SORBS1 149 52 57 29 0 0 0.578 0.202 0.221 0.112 0.000 0.000 chr10 95306773 95566371
view SORBS2 155 34 42 32 0 0 0.601 0.132 0.163 0.124 0.000 0.000 chr4 185580523 185817194
view SORBS3 214 72 37 26 0 0 0.829 0.279 0.143 0.101 0.000 0.000 chr8 22546927 22580788
view SORCS1 65 9 101 53 0 0 0.252 0.035 0.391 0.205 0.000 0.000 chr10 106568663 107169706
view SORCS2 84 4 54 26 0 0 0.326 0.016 0.209 0.101 0.000 0.000 chr4 7187538 7747827
view SORCS3 67 12 112 67 0 0 0.260 0.047 0.434 0.260 0.000 0.000 chr10 104636290 105270242
view SORD 153 40 83 52 0 0 0.593 0.155 0.322 0.202 0.000 0.000 chr15 45018195 45082185
view SORL1 135 42 70 42 0 0 0.523 0.163 0.271 0.163 0.000 0.000 chr11 121447314 121638763
view SORT1 119 15 109 70 0 0 0.461 0.058 0.422 0.271 0.000 0.000 chr1 109304575 109402918
view SOS1 122 44 103 52 0 0 0.473 0.171 0.399 0.202 0.000 0.000 chr2 38976549 39126051
view SOS2 190 60 58 41 0 0 0.736 0.233 0.225 0.159 0.000 0.000 chr14 50112130 50236578
view SOSTDC1 210 76 47 29 0 0 0.814 0.295 0.182 0.112 0.000 0.000 chr7 16456481 16470738
view SOST 210 69 45 33 1 1 0.814 0.267 0.174 0.128 0.004 0.004 chr17 43748738 43763791