Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SOWAHA 201 69 55 34 0 0 0.779 0.267 0.213 0.132 0.000 0.000 chr5 132808302 132821786
view SOWAHB 218 83 38 21 0 0 0.845 0.322 0.147 0.081 0.000 0.000 chr4 76889152 76903144
view SOWAHC 215 76 40 27 1 0 0.833 0.295 0.155 0.105 0.004 0.000 chr2 109609364 109623990
view SOWAHD 97 28 157 73 0 0 0.376 0.109 0.609 0.283 0.000 0.000 chrX 119753588 119765202
view SOX10 167 50 82 46 0 0 0.647 0.194 0.318 0.178 0.000 0.000 chr22 37967312 37989555
view SOX11 216 71 36 29 0 0 0.837 0.275 0.140 0.112 0.000 0.000 chr2 5687384 5706385
view SOX12 199 69 53 31 0 0 0.771 0.267 0.205 0.120 0.000 0.000 chr20 320552 335224
view SOX13 181 55 63 40 0 0 0.702 0.213 0.244 0.155 0.000 0.000 chr1 204068115 204132743
view SOX14 198 69 51 28 0 0 0.767 0.267 0.198 0.109 0.000 0.000 chr3 137759315 137771334
view SOX15 208 73 47 30 0 0 0.806 0.283 0.182 0.116 0.000 0.000 chr17 7583178 7595094
view SOX17 210 77 45 26 1 0 0.814 0.298 0.174 0.101 0.004 0.000 chr8 54452935 54465892
view SOX18 175 37 72 58 0 0 0.678 0.143 0.279 0.225 0.000 0.000 chr20 64042582 64054639
view SOX1 193 62 63 42 1 0 0.748 0.240 0.244 0.163 0.004 0.000 chr13 112062149 112076706
view SOX21 217 75 41 30 0 0 0.841 0.291 0.159 0.116 0.000 0.000 chr13 94704622 94717545
view SOX2 205 71 51 33 0 0 0.795 0.275 0.198 0.128 0.000 0.000 chr3 181706925 181719436
view SOX30 196 73 59 30 0 0 0.760 0.283 0.229 0.116 0.000 0.000 chr5 157620679 157657438
view SOX3 105 33 147 70 1 0 0.407 0.128 0.570 0.271 0.004 0.000 chrX 140497985 140510069
view SOX4 177 54 77 49 1 0 0.686 0.209 0.298 0.190 0.004 0.000 chr6 21588751 21603619
view SOX5 105 16 71 44 0 0 0.407 0.062 0.275 0.171 0.000 0.000 chr12 23524504 23954670
view SOX6 108 36 89 49 0 0 0.419 0.140 0.345 0.190 0.000 0.000 chr11 15961449 16361546
view SOX7 230 82 25 20 0 0 0.891 0.318 0.097 0.078 0.000 0.000 chr8 10718768 10735511
view SOX8 216 71 35 27 0 0 0.837 0.275 0.136 0.105 0.000 0.000 chr16 976770 991979
view SOX9 200 69 56 34 1 1 0.775 0.267 0.217 0.132 0.004 0.004 chr17 72116020 72131416
view SP100 144 33 67 46 0 0 0.558 0.128 0.260 0.178 0.000 0.000 chr2 230411201 230550606
view SP110 213 73 34 25 0 0 0.826 0.283 0.132 0.097 0.000 0.000 chr2 230160186 230224984
view SP140L 167 48 73 47 0 0 0.647 0.186 0.283 0.182 0.000 0.000 chr2 230322193 230408732
view SP140 184 59 60 37 0 0 0.713 0.229 0.233 0.143 0.000 0.000 chr2 230220736 230318215
view SP1 162 51 81 42 0 0 0.628 0.198 0.314 0.163 0.000 0.000 chr12 53375176 53421446
view SP2 182 55 68 45 0 0 0.705 0.213 0.264 0.174 0.000 0.000 chr17 47891236 47933957
view SP3 177 52 67 45 0 0 0.686 0.202 0.260 0.174 0.000 0.000 chr2 173895775 173970373
view SP4 212 80 37 19 0 0 0.822 0.310 0.143 0.074 0.000 0.000 chr7 21423083 21519822
view SP5 225 77 30 25 1 1 0.872 0.298 0.116 0.097 0.004 0.004 chr2 170710337 170723078
view SP6 194 58 61 45 1 0 0.752 0.225 0.236 0.174 0.004 0.000 chr17 47839908 47856163
view SP7 184 59 72 45 0 0 0.713 0.229 0.279 0.174 0.000 0.000 chr12 53321575 53341354
view SP8 207 65 47 37 1 0 0.802 0.252 0.182 0.143 0.004 0.000 chr7 20777279 20791886
view SP9 201 66 53 36 0 0 0.779 0.256 0.205 0.140 0.000 0.000 chr2 174329954 174343500
view SPA17 177 61 66 34 0 0 0.686 0.236 0.256 0.132 0.000 0.000 chr11 124668904 124702518
view SPAAR 209 75 43 25 0 0 0.810 0.291 0.167 0.097 0.000 0.000 chr9 35904490 35916686
view SPACA1 163 53 83 42 0 0 0.632 0.205 0.322 0.163 0.000 0.000 chr6 88042841 88071838
view SPACA3 234 88 23 16 1 1 0.907 0.341 0.089 0.062 0.004 0.004 chr17 32986847 33002877
view SPACA4 196 59 56 40 0 0 0.760 0.229 0.217 0.155 0.000 0.000 chr19 48601742 48612714
view SPACA5B 94 29 155 71 4 1 0.364 0.112 0.601 0.275 0.016 0.004 chrX 48125626 48137620
view SPACA5 83 17 170 85 2 1 0.322 0.066 0.659 0.329 0.008 0.004 chrX 48001988 48014733
view SPACA6 207 69 41 28 0 0 0.802 0.267 0.159 0.109 0.000 0.000 chr19 51688330 51710190
view SPACA7 195 69 51 34 0 0 0.756 0.267 0.198 0.132 0.000 0.000 chr13 112371355 112439689
view SPACA9 214 75 39 26 1 1 0.829 0.291 0.151 0.101 0.004 0.004 chr9 132873898 132895030
view SPACDR 174 54 77 47 0 0 0.674 0.209 0.298 0.182 0.000 0.000 chr7 100451620 100469260
view SPADH 206 70 49 33 0 0 0.798 0.271 0.190 0.128 0.000 0.000 chr10 122667850 122684494
view SPAG11A 65 19 103 45 32 0 0.252 0.074 0.399 0.174 0.124 0.000 chr8 7843008 7865943
view SPAG11B 102 39 66 31 77 30 0.395 0.151 0.256 0.120 0.298 0.116 chr8 7445603 7468542