Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SPAG16 43 8 114 53 0 0 0.167 0.031 0.442 0.205 0.000 0.000 chr2 213279464 214415501
view SPAG17 132 36 91 52 0 0 0.512 0.140 0.353 0.202 0.000 0.000 chr1 117948590 118190228
view SPAG1 182 59 63 40 0 0 0.705 0.229 0.244 0.155 0.000 0.000 chr8 100153587 100246904
view SPAG4 159 45 93 54 0 0 0.616 0.174 0.360 0.209 0.000 0.000 chr20 35610829 35626094
view SPAG5 164 51 81 45 0 0 0.636 0.198 0.314 0.174 0.000 0.000 chr17 28572574 28604025
view SPAG6 70 5 156 83 0 0 0.271 0.019 0.605 0.322 0.000 0.000 chr10 22340496 22422610
view SPAG7 211 81 45 22 1 1 0.818 0.314 0.174 0.085 0.004 0.004 chr17 4954226 4972817
view SPAG8 209 78 48 26 0 0 0.810 0.302 0.186 0.101 0.000 0.000 chr9 35804795 35817262
view SPAG9 145 35 78 51 0 0 0.562 0.136 0.302 0.198 0.000 0.000 chr17 50957174 51125868
view SPAM1 193 62 57 37 0 0 0.748 0.240 0.221 0.143 0.000 0.000 chr7 123920241 123965046
view SPANXA1 46 19 122 51 0 0 0.178 0.074 0.473 0.198 0.000 0.000 chrX 141578674 141589738
view SPANXA2 57 27 129 58 0 0 0.221 0.105 0.500 0.225 0.000 0.000 chrX 141584708 141595762
view SPANXB1 89 30 158 67 0 0 0.345 0.116 0.612 0.260 0.000 0.000 chrX 140997594 141008706
view SPANXC 109 40 142 62 2 0 0.422 0.155 0.550 0.240 0.008 0.000 chrX 141236463 141247517
view SPANXD 105 33 147 67 1 0 0.407 0.128 0.570 0.260 0.004 0.000 chrX 141692411 141703739
view SPANXN1 102 28 152 73 0 0 0.395 0.109 0.589 0.283 0.000 0.000 chrX 145242503 145261208
view SPANXN2 104 35 148 66 1 0 0.403 0.136 0.574 0.256 0.004 0.000 chrX 143706955 143725752
view SPANXN3 109 36 146 67 1 0 0.422 0.140 0.566 0.260 0.004 0.000 chrX 143503735 143522475
view SPANXN4 110 36 144 66 1 0 0.426 0.140 0.558 0.256 0.004 0.000 chrX 143020928 143039311
view SPANXN5 87 27 168 76 0 0 0.337 0.105 0.651 0.295 0.000 0.000 chrX 52791144 52802427
view SPARCL1 194 70 50 27 0 0 0.752 0.271 0.194 0.105 0.000 0.000 chr4 87468335 87534376
view SPARC 220 78 35 25 0 0 0.853 0.302 0.136 0.097 0.000 0.000 chr5 151656096 151691915
view SPART 188 59 62 39 0 0 0.729 0.229 0.240 0.151 0.000 0.000 chr13 36296638 36351394
view SPAST 170 56 77 44 0 0 0.659 0.217 0.298 0.171 0.000 0.000 chr2 32058556 32162637
view SPATA12 219 78 38 27 1 0 0.849 0.302 0.147 0.105 0.004 0.000 chr3 57055664 57080432
view SPATA13 177 54 39 27 0 0 0.686 0.209 0.151 0.105 0.000 0.000 chr13 24155720 24312069
view SPATA16 99 17 97 53 0 0 0.384 0.066 0.376 0.205 0.000 0.000 chr3 172884357 173146235
view SPATA17 125 33 87 48 0 0 0.484 0.128 0.337 0.186 0.000 0.000 chr1 217626344 217876696
view SPATA18 153 55 74 36 0 0 0.593 0.213 0.287 0.140 0.000 0.000 chr4 52046304 52102299
view SPATA19 180 50 69 49 0 0 0.698 0.194 0.267 0.190 0.000 0.000 chr11 133835631 133850513
view SPATA1 155 51 85 44 0 0 0.601 0.198 0.329 0.171 0.000 0.000 chr1 84501386 84572379
view SPATA20 166 34 86 66 0 0 0.643 0.132 0.333 0.256 0.000 0.000 chr17 50542174 50560852
view SPATA21 175 45 65 47 0 0 0.678 0.174 0.252 0.182 0.000 0.000 chr1 16393643 16442424
view SPATA22 209 73 43 27 0 0 0.810 0.283 0.167 0.105 0.000 0.000 chr17 3435019 3476819
view SPATA24 167 55 87 47 0 0 0.647 0.213 0.337 0.182 0.000 0.000 chr5 139391767 139409089
view SPATA25 202 76 51 27 1 0 0.783 0.295 0.198 0.105 0.004 0.000 chr20 45881491 45892622
view SPATA2L 208 63 43 35 0 0 0.806 0.244 0.167 0.136 0.000 0.000 chr16 89691357 89706705
view SPATA2 212 78 45 26 0 0 0.822 0.302 0.174 0.101 0.000 0.000 chr20 49898391 49920529
view SPATA31A1 211 82 42 18 1 1 0.818 0.318 0.163 0.070 0.004 0.004 chr9 39350669 39366962
view SPATA31A3 203 67 34 19 18 16 0.787 0.260 0.132 0.074 0.070 0.062 chr9 66981304 66997550
view SPATA31A5 0 0 23 1 0 0 0.000 0.000 0.089 0.004 0.000 0.000 chr9 60909407 60925653
view SPATA31A6 90 21 125 59 5 0 0.349 0.081 0.484 0.229 0.019 0.000 chr9 42178659 42194887
view SPATA31A7 112 42 87 43 45 9 0.434 0.163 0.337 0.167 0.174 0.035 chr9 61185036 61201280
view SPATA31C1 193 52 59 47 0 0 0.748 0.202 0.229 0.182 0.000 0.000 chr9 87912962 87928657
view SPATA31C2 222 78 31 22 0 0 0.860 0.302 0.120 0.085 0.000 0.000 chr9 88124305 88143475
view SPATA31D1 190 60 64 42 0 0 0.736 0.233 0.248 0.163 0.000 0.000 chr9 81983772 82000253
view SPATA31D3 189 61 66 42 1 0 0.733 0.236 0.256 0.163 0.004 0.000 chr9 81938500 81955093
view SPATA31D4 179 53 72 45 0 0 0.694 0.205 0.279 0.174 0.000 0.000 chr9 81923428 81939998
view SPATA31E1 226 80 30 23 0 0 0.876 0.310 0.116 0.089 0.000 0.000 chr9 87877877 87893903
view SPATA31F1 223 80 35 25 0 0 0.864 0.310 0.136 0.097 0.000 0.000 chr9 34718053 34734488