Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SPATA31F3 216 79 40 25 0 0 0.837 0.306 0.155 0.097 0.000 0.000 chr9 34884066 34900764
view SPATA32 206 75 50 28 0 0 0.798 0.291 0.194 0.109 0.000 0.000 chr17 45249393 45267094
view SPATA33 210 68 44 35 0 0 0.814 0.264 0.171 0.136 0.000 0.000 chr16 89652836 89675458
view SPATA3 217 83 39 20 0 0 0.841 0.322 0.151 0.078 0.000 0.000 chr2 230991121 231013040
view SPATA45 200 74 53 26 0 0 0.775 0.287 0.205 0.101 0.000 0.000 chr1 212825141 212852649
view SPATA46 238 91 19 13 0 0 0.922 0.353 0.074 0.050 0.000 0.000 chr1 162368203 162381854
view SPATA48 163 36 77 56 0 0 0.632 0.140 0.298 0.217 0.000 0.000 chr7 50090883 50164256
view SPATA4 227 86 27 17 1 1 0.880 0.333 0.105 0.066 0.004 0.004 chr4 176179579 176200585
view SPATA5L1 194 69 60 33 0 0 0.752 0.267 0.233 0.128 0.000 0.000 chr15 45397336 45426415
view SPATA5 130 36 83 48 0 0 0.504 0.140 0.322 0.186 0.000 0.000 chr4 122918078 123324433
view SPATA6L 203 72 37 27 0 0 0.787 0.279 0.143 0.105 0.000 0.000 chr9 4593316 4671480
view SPATA6 160 57 80 40 0 0 0.620 0.221 0.310 0.155 0.000 0.000 chr1 48290373 48477204
view SPATA7 181 68 66 35 0 0 0.702 0.264 0.256 0.136 0.000 0.000 chr14 88380657 88443460
view SPATA9 189 55 63 46 0 0 0.733 0.213 0.244 0.178 0.000 0.000 chr5 95653315 95687991
view SPATC1L 125 19 91 55 0 0 0.484 0.074 0.353 0.213 0.000 0.000 chr21 46156160 46189459
view SPATC1 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr8 144007280 144052114
view SPATS1 195 68 53 32 0 0 0.756 0.264 0.205 0.124 0.000 0.000 chr6 44337650 44385179
view SPATS2L 149 49 64 33 0 0 0.578 0.190 0.248 0.128 0.000 0.000 chr2 200301693 200487264
view SPATS2 78 7 155 87 0 0 0.302 0.027 0.601 0.337 0.000 0.000 chr12 49362462 49532425
view SPC24 218 79 36 22 0 0 0.845 0.306 0.140 0.085 0.000 0.000 chr19 11140493 11160782
view SPC25 180 57 65 37 0 0 0.698 0.221 0.252 0.143 0.000 0.000 chr2 168865891 168895430
view SPCS1 204 69 52 34 1 1 0.791 0.267 0.202 0.132 0.004 0.004 chr3 52701106 52716148
view SPCS2 188 63 61 36 1 1 0.729 0.244 0.236 0.140 0.004 0.004 chr11 74944266 74984033
view SPCS3 234 87 22 16 1 1 0.907 0.337 0.085 0.062 0.004 0.004 chr4 176314966 176337245
view SPDEF 190 57 62 45 0 0 0.736 0.221 0.240 0.174 0.000 0.000 chr6 34532802 34561329
view SPDL1 198 68 52 32 0 0 0.767 0.264 0.202 0.124 0.000 0.000 chr5 169578773 169609778
view SPDYA 168 53 78 47 0 0 0.651 0.205 0.302 0.182 0.000 0.000 chr2 28805834 28855610
view SPDYC 220 81 37 24 1 0 0.853 0.314 0.143 0.093 0.004 0.000 chr11 65165233 65178374
view SPDYE10 108 26 92 56 31 4 0.419 0.101 0.357 0.217 0.120 0.016 chr7 73099008 73160431
view SPDYE11 4 1 80 20 0 0 0.016 0.004 0.310 0.078 0.000 0.000 chr7 73042862 73062911
view SPDYE12 174 47 70 49 4 2 0.674 0.182 0.271 0.190 0.016 0.008 chr7 74899289 74920078
view SPDYE13 10 0 63 10 0 0 0.039 0.000 0.244 0.039 0.000 0.000 chr7 75275790 75294501
view SPDYE14 1 0 38 0 0 0 0.004 0.000 0.147 0.000 0.000 0.000 chr7 75302376 75322429
view SPDYE15 0 0 41 0 0 0 0.000 0.000 0.159 0.000 0.000 0.000 chr7 75330343 75350396
view SPDYE16 127 33 103 55 3 0 0.492 0.128 0.399 0.213 0.012 0.000 chr7 76526313 76548297
view SPDYE17 147 48 90 46 5 0 0.570 0.186 0.349 0.178 0.019 0.000 chr7 77017306 77037361
view SPDYE18 207 69 46 32 1 0 0.802 0.267 0.178 0.124 0.004 0.000 chr7 77045391 77067558
view SPDYE1 196 63 55 38 0 0 0.760 0.244 0.213 0.147 0.000 0.000 chr7 43992897 44015124
view SPDYE21 229 86 25 15 0 0 0.888 0.333 0.097 0.058 0.000 0.000 chr7 67271941 67294005
view SPDYE2B 64 18 98 48 37 6 0.248 0.070 0.380 0.186 0.143 0.023 chr7 102645319 102667625
view SPDYE2 82 28 62 44 85 12 0.318 0.109 0.240 0.171 0.329 0.047 chr7 102546226 102568538
view SPDYE3 171 49 73 47 0 0 0.663 0.190 0.283 0.182 0.000 0.000 chr7 100302702 100327196
view SPDYE4 208 74 40 23 0 0 0.806 0.287 0.155 0.089 0.000 0.000 chr17 8745853 8763546
view SPDYE5 203 62 48 36 0 0 0.787 0.240 0.186 0.140 0.000 0.000 chr7 75487320 75509316
view SPDYE6 219 78 36 25 1 0 0.849 0.302 0.140 0.097 0.004 0.000 chr7 102340746 102361444
view SPDYE8 69 13 121 56 22 3 0.267 0.050 0.469 0.217 0.085 0.012 chr7 73014719 73034766
view SPDYE9 82 29 115 59 52 14 0.318 0.112 0.446 0.229 0.202 0.054 chr7 73070972 73091038
view SPECC1L 162 61 73 32 0 0 0.628 0.236 0.283 0.124 0.000 0.000 chr22 24265831 24422738
view SPECC1 124 23 99 61 0 0 0.481 0.089 0.384 0.236 0.000 0.000 chr17 20004359 20324026
view SPEF1 208 71 42 28 2 1 0.806 0.275 0.163 0.109 0.008 0.004 chr20 3772504 3786448