Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SPTSSA 171 50 72 49 0 0 0.663 0.194 0.279 0.190 0.000 0.000 chr14 34427788 34467240
view SPTSSB 205 69 47 32 0 0 0.795 0.267 0.182 0.124 0.000 0.000 chr3 161339798 161376517
view SPTY2D1 221 80 29 19 0 0 0.857 0.310 0.112 0.074 0.000 0.000 chr11 18601403 18639342
view SPX 213 78 41 25 1 0 0.826 0.302 0.159 0.097 0.004 0.000 chr12 21521296 21537947
view SPZ1 216 80 42 25 0 0 0.837 0.310 0.163 0.097 0.000 0.000 chr5 80315002 80326842
view SQLE 188 64 64 36 0 0 0.729 0.248 0.248 0.140 0.000 0.000 chr8 124993505 125027283
view SQOR 169 57 60 32 0 0 0.655 0.221 0.233 0.124 0.000 0.000 chr15 45630029 45696281
view SQSTM1 230 78 23 22 0 0 0.891 0.302 0.089 0.085 0.000 0.000 chr5 179815905 179843078
view SRA1 200 69 55 33 0 0 0.775 0.267 0.213 0.128 0.000 0.000 chr5 140545068 140562473
view SRARP 199 66 56 36 1 1 0.771 0.256 0.217 0.140 0.004 0.004 chr1 15999236 16013807
view SRBD1 178 57 54 33 0 0 0.690 0.221 0.209 0.128 0.000 0.000 chr2 45383680 45616267
view SRCAP 103 18 145 79 0 0 0.399 0.070 0.562 0.306 0.000 0.000 chr16 30694171 30746409
view SRCIN1 130 30 96 56 0 0 0.504 0.116 0.372 0.217 0.000 0.000 chr17 38525031 38610952
view SRC 140 31 89 55 0 0 0.543 0.120 0.345 0.213 0.000 0.000 chr20 37341140 37411050
view SRD5A1 202 71 45 26 1 1 0.783 0.275 0.174 0.101 0.004 0.004 chr5 6628440 6679386
view SRD5A2 192 68 55 28 0 0 0.744 0.264 0.213 0.109 0.000 0.000 chr2 31517480 31585938
view SRD5A3 191 57 57 41 0 0 0.740 0.221 0.221 0.159 0.000 0.000 chr4 55341242 55378100
view SREBF1 175 39 71 55 0 0 0.678 0.151 0.275 0.213 0.000 0.000 chr17 17806334 17841986
view SREBF2 167 53 67 34 0 0 0.647 0.205 0.260 0.132 0.000 0.000 chr22 41828105 41912305
view SREK1IP1 170 63 71 35 0 0 0.659 0.244 0.275 0.136 0.000 0.000 chr5 64713148 64773691
view SREK1 192 70 60 34 0 0 0.744 0.271 0.233 0.132 0.000 0.000 chr5 66139300 66188615
view SRFBP1 113 29 124 67 0 0 0.438 0.112 0.481 0.260 0.000 0.000 chr5 121956975 122033633
view SRF 177 60 75 41 0 0 0.686 0.233 0.291 0.159 0.000 0.000 chr6 43166269 43186506
view SRGAP1 84 15 87 54 0 0 0.326 0.058 0.337 0.209 0.000 0.000 chr12 63839700 64167217
view SRGAP2B 27 3 138 51 0 0 0.105 0.012 0.535 0.198 0.000 0.000 chr1 144882288 145100328
view SRGAP2C 136 28 76 48 0 0 0.527 0.109 0.295 0.186 0.000 0.000 chr1 121179975 121397874
view SRGAP2 90 15 100 59 0 0 0.349 0.058 0.388 0.229 0.000 0.000 chr1 206198541 206469436
view SRGAP3 113 24 68 43 0 0 0.438 0.093 0.264 0.167 0.000 0.000 chr3 8975591 9254646
view SRGN 204 70 44 27 0 0 0.791 0.271 0.171 0.105 0.000 0.000 chr10 69083103 69109805
view SRI 200 70 53 33 0 0 0.775 0.271 0.205 0.128 0.000 0.000 chr7 88200115 88225038
view SRL 178 45 54 38 0 0 0.690 0.174 0.209 0.147 0.000 0.000 chr16 4184374 4247080
view SRMS 177 44 71 54 0 0 0.686 0.171 0.275 0.209 0.000 0.000 chr20 63533489 63552749
view SRM 172 48 82 53 0 0 0.667 0.186 0.318 0.205 0.000 0.000 chr1 11049589 11065018
view SRP14 212 81 40 18 1 1 0.822 0.314 0.155 0.070 0.004 0.004 chr15 40030690 40044181
view SRP19 203 73 52 30 0 0 0.787 0.283 0.202 0.116 0.000 0.000 chr5 112856287 112874788
view SRP54 197 66 54 36 0 0 0.764 0.256 0.209 0.140 0.000 0.000 chr14 34977992 35034567
view SRP68 182 57 58 35 0 0 0.705 0.221 0.225 0.136 0.000 0.000 chr17 76033785 76077517
view SRP72 193 74 55 26 0 0 0.748 0.287 0.213 0.101 0.000 0.000 chr4 56462617 56508681
view SRP9 236 93 21 11 0 0 0.915 0.360 0.081 0.043 0.000 0.000 chr1 225772826 225795464
view SRPK1 170 54 65 39 0 0 0.659 0.209 0.252 0.151 0.000 0.000 chr6 35827966 35926098
view SRPK2 140 32 96 64 0 0 0.543 0.124 0.372 0.248 0.000 0.000 chr7 105111374 105393921
view SRPK3 91 24 161 75 0 0 0.353 0.093 0.624 0.291 0.000 0.000 chrX 153776041 153790730
view SRPRA 197 69 59 34 0 0 0.764 0.267 0.229 0.132 0.000 0.000 chr11 126257938 126273895
view SRPRB 222 77 32 26 0 0 0.860 0.298 0.124 0.101 0.000 0.000 chr3 133800815 133826492
view SRPX2 94 26 155 72 0 0 0.364 0.101 0.601 0.279 0.000 0.000 chrX 100639199 100680788
view SRPX 64 10 177 83 0 0 0.248 0.039 0.686 0.322 0.000 0.000 chrX 38144339 38225871
view SRRD 223 88 33 15 0 0 0.864 0.341 0.128 0.058 0.000 0.000 chr22 26478877 26499658
view SRRM1 175 48 75 52 0 0 0.678 0.186 0.291 0.202 0.000 0.000 chr1 24638302 24678281
view SRRM2 200 68 51 32 0 0 0.775 0.264 0.198 0.124 0.000 0.000 chr16 2747638 2776412
view SRRM3 161 44 70 38 0 0 0.624 0.171 0.271 0.147 0.000 0.000 chr7 76196896 76292287