Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SSU72L6 232 93 24 11 2 1 0.899 0.360 0.093 0.043 0.008 0.004 chr7 124471317 124482664
view SSU72 192 58 49 34 0 0 0.744 0.225 0.190 0.132 0.000 0.000 chr1 1536673 1579863
view SSUH2 227 79 24 20 0 0 0.880 0.306 0.093 0.078 0.000 0.000 chr3 8614386 8649798
view SSX1 104 34 152 69 0 0 0.403 0.132 0.589 0.267 0.000 0.000 chrX 48250392 48272444
view SSX2B 17 0 66 12 1 0 0.066 0.000 0.256 0.047 0.004 0.000 chrX 52746252 52766536
view SSX2IP 159 41 83 52 0 0 0.616 0.159 0.322 0.202 0.000 0.000 chr1 84638706 84695461
view SSX2 34 2 89 20 3 0 0.132 0.008 0.345 0.078 0.012 0.000 chrX 52691896 52712178
view SSX3 102 30 153 72 1 1 0.395 0.116 0.593 0.279 0.004 0.004 chrX 48341427 48361703
view SSX4B 40 6 161 65 0 0 0.155 0.023 0.624 0.252 0.000 0.000 chrX 48397082 48416960
view SSX4 21 1 123 36 0 0 0.081 0.004 0.477 0.140 0.000 0.000 chrX 48378539 48398347
view SSX5 97 31 156 72 0 0 0.376 0.120 0.605 0.279 0.000 0.000 chrX 48181220 48201795
view SSX7 88 21 160 77 1 0 0.341 0.081 0.620 0.298 0.004 0.000 chrX 52639061 52659900
view ST13 171 54 76 42 0 0 0.663 0.209 0.295 0.163 0.000 0.000 chr22 40819535 40861639
view ST14 145 38 74 44 0 0 0.562 0.147 0.287 0.171 0.000 0.000 chr11 130154782 130215362
view ST18 51 2 127 75 0 0 0.198 0.008 0.492 0.291 0.000 0.000 chr8 52105838 52414756
view ST3GAL1 165 43 43 33 0 0 0.640 0.167 0.167 0.128 0.000 0.000 chr8 133449848 133576887
view ST3GAL2 155 49 76 37 0 0 0.601 0.190 0.295 0.143 0.000 0.000 chr16 70370977 70444100
view ST3GAL3 136 48 89 41 0 0 0.527 0.186 0.345 0.159 0.000 0.000 chr1 43702536 43936159
view ST3GAL4 161 46 69 39 0 0 0.624 0.178 0.267 0.151 0.000 0.000 chr11 126350686 126419638
view ST3GAL5 184 64 65 36 1 1 0.713 0.248 0.252 0.140 0.004 0.004 chr2 85832120 85893990
view ST3GAL6 185 58 63 40 0 0 0.717 0.225 0.244 0.155 0.000 0.000 chr3 98758340 98800852
view ST6GAL1 180 49 43 30 0 0 0.698 0.190 0.167 0.116 0.000 0.000 chr3 186925526 187083553
view ST6GAL2 185 59 62 42 0 0 0.717 0.229 0.240 0.163 0.000 0.000 chr2 106796600 106891167
view ST6GALNAC1 205 69 48 31 0 0 0.795 0.267 0.186 0.120 0.000 0.000 chr17 76619763 76648757
view ST6GALNAC2 212 72 36 25 0 0 0.822 0.279 0.140 0.097 0.000 0.000 chr17 76560377 76590860
view ST6GALNAC3 51 1 123 74 0 0 0.198 0.004 0.477 0.287 0.000 0.000 chr1 76069746 76639603
view ST6GALNAC4 213 70 40 30 0 0 0.826 0.271 0.155 0.116 0.000 0.000 chr9 127902886 127922041
view ST6GALNAC5 100 30 92 45 0 0 0.388 0.116 0.357 0.174 0.000 0.000 chr1 76862480 77072546
view ST6GALNAC6 179 48 63 43 0 0 0.694 0.186 0.244 0.167 0.000 0.000 chr9 127880321 127904603
view ST7L 181 69 62 30 0 0 0.702 0.267 0.240 0.116 0.000 0.000 chr1 112518514 112624141
view ST7 93 20 105 61 0 0 0.360 0.078 0.407 0.236 0.000 0.000 chr7 116948501 117235176
view ST8SIA1 140 37 86 53 0 0 0.543 0.143 0.333 0.205 0.000 0.000 chr12 22188391 22339707
view ST8SIA2 185 57 55 35 0 0 0.717 0.221 0.213 0.136 0.000 0.000 chr15 92388881 92473728
view ST8SIA3 211 73 46 31 0 0 0.818 0.283 0.178 0.120 0.000 0.000 chr18 57347557 57373931
view ST8SIA4 148 50 89 44 0 0 0.574 0.194 0.345 0.171 0.000 0.000 chr5 100801933 100908282
view ST8SIA5 180 60 55 36 0 0 0.698 0.233 0.213 0.140 0.000 0.000 chr18 46662821 46762053
view ST8SIA6 147 38 72 45 0 0 0.570 0.147 0.279 0.174 0.000 0.000 chr10 17310421 17459595
view STAB1 183 54 59 38 0 0 0.709 0.209 0.229 0.147 0.000 0.000 chr3 52490338 52529495
view STAB2 127 21 66 47 0 0 0.492 0.081 0.256 0.182 0.000 0.000 chr12 103582273 103771719
view STAC2 183 53 65 44 0 0 0.709 0.205 0.252 0.171 0.000 0.000 chr17 39205541 39230945
view STAC3 214 77 42 26 1 1 0.829 0.298 0.163 0.101 0.004 0.004 chr12 57238458 57256187
view STAC 157 55 67 29 0 0 0.609 0.213 0.260 0.112 0.000 0.000 chr3 36375504 36553007
view STAG1 119 21 109 69 0 0 0.461 0.081 0.422 0.267 0.000 0.000 chr3 136331236 136757378
view STAG2 74 23 168 71 0 0 0.287 0.089 0.651 0.275 0.000 0.000 chrX 123956706 124107656
view STAG3 160 48 84 47 0 0 0.620 0.186 0.326 0.182 0.000 0.000 chr7 100172918 100219381
view STAM2 179 56 69 42 0 0 0.694 0.217 0.267 0.163 0.000 0.000 chr2 152111801 152180763
view STAMBPL1 193 70 56 30 0 0 0.748 0.271 0.217 0.116 0.000 0.000 chr10 88875245 88928487
view STAMBP 183 64 63 34 0 0 0.709 0.248 0.244 0.132 0.000 0.000 chr2 73823961 73872168
view STAM 212 82 39 19 0 0 0.822 0.318 0.151 0.074 0.000 0.000 chr10 17639151 17721824
view STAP1 190 60 57 38 0 0 0.736 0.233 0.221 0.147 0.000 0.000 chr4 67553727 67612337