Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SPON1 111 27 67 39 0 0 0.430 0.105 0.260 0.151 0.000 0.000 chr11 13957723 14273133
view SPON2 215 81 41 22 0 0 0.833 0.314 0.159 0.085 0.000 0.000 chr4 1161932 1177583
view SPOPL 185 71 64 29 0 0 0.717 0.275 0.248 0.112 0.000 0.000 chr2 138496770 138578547
view SPOP 194 58 53 37 0 0 0.752 0.225 0.205 0.143 0.000 0.000 chr17 49593884 49683097
view SPOUT1 204 74 51 28 0 0 0.791 0.287 0.198 0.109 0.000 0.000 chr9 128814651 128834794
view SPP1 217 79 40 25 0 0 0.841 0.306 0.155 0.097 0.000 0.000 chr4 87970714 87988411
view SPP2 216 84 38 19 0 0 0.837 0.326 0.147 0.074 0.000 0.000 chr2 234045702 234082134
view SPPL2A 167 53 66 37 0 0 0.647 0.205 0.256 0.143 0.000 0.000 chr15 50697266 50770706
view SPPL2B 206 65 42 30 0 0 0.798 0.252 0.163 0.116 0.000 0.000 chr19 2323684 2360095
view SPPL2C 195 59 58 41 0 0 0.756 0.229 0.225 0.159 0.000 0.000 chr17 45839881 45852067
view SPPL3 159 58 74 41 0 0 0.616 0.225 0.287 0.159 0.000 0.000 chr12 120757510 120909358
view SPRED1 188 73 54 24 0 0 0.729 0.283 0.209 0.093 0.000 0.000 chr15 38247836 38362249
view SPRED2 137 33 82 48 0 0 0.531 0.128 0.318 0.186 0.000 0.000 chr2 65305851 65437599
view SPRED3 179 66 73 38 0 0 0.694 0.256 0.283 0.147 0.000 0.000 chr19 38383697 38404587
view SPRING1 180 67 69 33 0 0 0.698 0.260 0.267 0.128 0.000 0.000 chr12 116705171 116743069
view SPRN 236 89 20 14 0 0 0.915 0.345 0.078 0.054 0.000 0.000 chr10 133415666 133429625
view SPRR1A 200 71 53 33 4 1 0.775 0.275 0.205 0.128 0.016 0.004 chr1 152979081 152990814
view SPRR1B 221 84 35 20 0 0 0.857 0.326 0.136 0.078 0.000 0.000 chr1 153026203 153037900
view SPRR2A 220 85 35 19 3 1 0.853 0.329 0.136 0.074 0.012 0.004 chr1 153051120 153062512
view SPRR2B 214 80 42 23 0 0 0.829 0.310 0.163 0.089 0.000 0.000 chr1 153065226 153076611
view SPRR2D 226 87 32 18 0 0 0.876 0.337 0.124 0.070 0.000 0.000 chr1 153034732 153046120
view SPRR2E 227 84 31 21 0 0 0.880 0.326 0.120 0.081 0.000 0.000 chr1 153088135 153099526
view SPRR2F 217 82 41 23 0 0 0.841 0.318 0.159 0.089 0.000 0.000 chr1 153107121 153118516
view SPRR2G 211 83 45 21 0 0 0.818 0.322 0.174 0.081 0.000 0.000 chr1 153144582 153155890
view SPRR3 209 73 44 29 1 1 0.810 0.283 0.171 0.112 0.004 0.004 chr1 152996749 153008856
view SPRR4 219 80 37 23 0 0 0.849 0.310 0.143 0.089 0.000 0.000 chr1 152965648 152977574
view SPRR5 217 76 39 28 0 0 0.841 0.295 0.151 0.109 0.000 0.000 chr1 152942206 152954255
view SPRTN 175 61 81 42 0 0 0.678 0.236 0.314 0.163 0.000 0.000 chr1 231333293 231360023
view SPRY1 204 78 51 26 1 1 0.791 0.302 0.198 0.101 0.004 0.004 chr4 123391795 123408755
view SPRY2 210 75 45 28 0 0 0.814 0.291 0.174 0.109 0.000 0.000 chr13 80330976 80346126
view SPRY3 53 7 174 80 0 0 0.205 0.027 0.674 0.310 0.000 0.000 chrX 155607586 155787459
view SPRY4 188 59 59 37 1 1 0.729 0.229 0.229 0.143 0.004 0.004 chr5 142305430 142330021
view SPRYD3 201 69 50 30 0 0 0.779 0.267 0.194 0.116 0.000 0.000 chr12 53059316 53084390
view SPRYD4 184 67 70 37 0 0 0.713 0.260 0.271 0.143 0.000 0.000 chr12 56463578 56484708
view SPRYD7 189 57 64 45 0 0 0.733 0.221 0.248 0.174 0.000 0.000 chr13 49907702 49941340
view SPR 163 41 87 56 0 0 0.632 0.159 0.337 0.217 0.000 0.000 chr2 72882408 72897158
view SPSB1 184 52 49 35 0 0 0.713 0.202 0.190 0.136 0.000 0.000 chr1 9287894 9374532
view SPSB2 198 65 56 36 0 0 0.767 0.252 0.217 0.140 0.000 0.000 chr12 6865935 6878303
view SPSB3 218 74 37 28 0 0 0.845 0.287 0.143 0.109 0.000 0.000 chr16 1771712 1787571
view SPSB4 126 35 92 54 0 0 0.488 0.136 0.357 0.209 0.000 0.000 chr3 141046347 141153611
view SPTA1 184 66 51 27 0 0 0.713 0.256 0.198 0.105 0.000 0.000 chr1 158605704 158691715
view SPTAN1 155 58 79 36 0 0 0.601 0.225 0.306 0.140 0.000 0.000 chr9 128547587 128638662
view SPTBN1 184 63 44 30 0 0 0.713 0.244 0.171 0.116 0.000 0.000 chr2 54451327 54676446
view SPTBN2 163 62 74 31 0 0 0.632 0.240 0.287 0.120 0.000 0.000 chr11 66677497 66734216
view SPTBN4 116 20 97 61 0 0 0.450 0.078 0.376 0.236 0.000 0.000 chr19 40462001 40581464
view SPTBN5 197 60 48 36 0 0 0.764 0.233 0.186 0.140 0.000 0.000 chr15 41843146 41899053
view SPTB 133 26 88 58 0 0 0.516 0.101 0.341 0.225 0.000 0.000 chr14 64741283 64884907
view SPTLC1 178 63 62 35 0 0 0.690 0.244 0.240 0.136 0.000 0.000 chr9 92026147 92120413
view SPTLC2 122 17 86 51 0 0 0.473 0.066 0.333 0.198 0.000 0.000 chr14 77500997 77621637
view SPTLC3 145 46 70 38 0 0 0.562 0.178 0.271 0.147 0.000 0.000 chr20 13003972 13174103