Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SPEF2 133 38 69 39 0 0 0.516 0.147 0.267 0.151 0.000 0.000 chr5 35612863 35819611
view SPEGNB 187 53 69 50 0 0 0.725 0.205 0.267 0.194 0.000 0.000 chr2 219491131 219503287
view SPEG 151 35 77 52 0 0 0.585 0.136 0.298 0.202 0.000 0.000 chr2 219429843 219498629
view SPEM1 198 60 50 37 2 0 0.767 0.233 0.194 0.143 0.008 0.000 chr17 7415324 7426632
view SPEM2 181 46 68 52 2 0 0.702 0.178 0.264 0.202 0.008 0.000 chr17 7420616 7432568
view SPEM3 176 47 78 56 1 0 0.682 0.182 0.302 0.217 0.004 0.000 chr17 7423857 7437820
view SPEN 151 40 84 48 0 0 0.585 0.155 0.326 0.186 0.000 0.000 chr1 15842707 15945456
view SPESP1 200 74 48 23 0 0 0.775 0.287 0.186 0.089 0.000 0.000 chr15 68925525 68951811
view SPG11 94 26 124 61 0 0 0.364 0.101 0.481 0.236 0.000 0.000 chr15 44557696 44668662
view SPG21 175 56 71 39 0 0 0.678 0.217 0.275 0.151 0.000 0.000 chr15 64958022 64994914
view SPG7 178 46 62 45 0 0 0.690 0.178 0.240 0.174 0.000 0.000 chr16 89503403 89562766
view SPHK1 205 70 49 31 0 0 0.795 0.271 0.190 0.120 0.000 0.000 chr17 76379609 76392855
view SPHK2 198 64 56 37 0 0 0.767 0.248 0.217 0.143 0.000 0.000 chr19 48614506 48635405
view SPHKAP 160 48 62 39 0 0 0.620 0.186 0.240 0.151 0.000 0.000 chr2 227974955 228186687
view SPI1 194 60 61 44 0 0 0.752 0.233 0.236 0.171 0.000 0.000 chr11 47349860 47383547
view SPIB 193 51 58 49 1 0 0.748 0.198 0.225 0.190 0.004 0.000 chr19 50413938 50436314
view SPICE1 181 62 65 38 0 0 0.702 0.240 0.252 0.147 0.000 0.000 chr3 113437718 113520156
view SPIC 198 68 58 35 0 0 0.767 0.264 0.225 0.136 0.000 0.000 chr12 101470336 101491997
view SPIDR 107 19 112 67 0 0 0.415 0.074 0.434 0.260 0.000 0.000 chr8 47255938 47741306
view SPIN1 87 12 122 73 0 0 0.337 0.047 0.473 0.283 0.000 0.000 chr9 88383444 88483694
view SPIN2A 101 32 155 71 0 0 0.391 0.124 0.601 0.275 0.000 0.000 chrX 57130650 57142397
view SPIN2B 98 33 154 67 1 0 0.380 0.128 0.597 0.260 0.004 0.000 chrX 57114682 57126548
view SPIN3 94 32 161 72 0 0 0.364 0.124 0.624 0.279 0.000 0.000 chrX 56985831 57000541
view SPIN4 86 20 165 79 1 0 0.333 0.078 0.640 0.306 0.004 0.000 chrX 63342228 63356332
view SPINDOC 195 56 54 40 1 1 0.756 0.217 0.209 0.155 0.004 0.004 chr11 63808456 63832716
view SPINK13 187 73 65 27 0 0 0.725 0.283 0.252 0.105 0.000 0.000 chr5 148263794 148291255
view SPINK14 54 30 140 58 0 0 0.209 0.116 0.543 0.225 0.000 0.000 chr5 148163546 148180619
view SPINK1 212 75 43 27 1 1 0.822 0.291 0.167 0.105 0.004 0.004 chr5 147819582 147836671
view SPINK2 213 74 37 25 1 1 0.826 0.287 0.143 0.097 0.004 0.004 chr4 56804861 56826701
view SPINK4 188 69 68 36 0 0 0.729 0.267 0.264 0.140 0.000 0.000 chr9 33235167 33253567
view SPINK5 191 77 52 23 0 0 0.740 0.298 0.202 0.089 0.000 0.000 chr5 148058980 148142382
view SPINK6 218 85 38 20 0 0 0.845 0.329 0.147 0.078 0.000 0.000 chr5 148198042 148220137
view SPINK7 223 87 34 17 1 1 0.864 0.337 0.132 0.066 0.004 0.004 chr5 148307423 148320919
view SPINK8 130 39 119 61 0 0 0.504 0.151 0.461 0.236 0.000 0.000 chr3 48301842 48338661
view SPINK9 214 88 43 16 1 1 0.829 0.341 0.167 0.062 0.004 0.004 chr5 148330559 148344852
view SPINT1 178 53 75 48 0 0 0.690 0.205 0.291 0.186 0.000 0.000 chr15 40839048 40863207
view SPINT2 199 71 48 27 0 0 0.771 0.275 0.186 0.105 0.000 0.000 chr19 38259573 38297615
view SPINT3 226 83 32 22 0 0 0.876 0.322 0.124 0.085 0.000 0.000 chr20 45507461 45520622
view SPINT4 228 90 28 13 1 1 0.884 0.349 0.109 0.050 0.004 0.004 chr20 45717347 45730830
view SPIRE1 163 49 69 41 0 0 0.632 0.190 0.267 0.159 0.000 0.000 chr18 12441512 12663107
view SPIRE2 177 43 56 40 0 0 0.686 0.167 0.217 0.155 0.000 0.000 chr16 89823475 89876319
view SPNS1 198 74 58 29 0 0 0.767 0.287 0.225 0.112 0.000 0.000 chr16 28969778 28989543
view SPNS2 201 59 37 30 0 0 0.779 0.229 0.143 0.116 0.000 0.000 chr17 4493881 4544035
view SPNS3 180 46 57 44 0 0 0.698 0.178 0.221 0.171 0.000 0.000 chr17 4428940 4493204
view SPN 196 62 58 40 0 0 0.760 0.240 0.225 0.155 0.000 0.000 chr16 29658247 29675876
view SPO11 160 47 93 55 0 0 0.620 0.182 0.360 0.213 0.000 0.000 chr20 57324803 57348993
view SPOCD1 129 32 92 50 0 0 0.500 0.124 0.357 0.194 0.000 0.000 chr1 31785422 31821022
view SPOCK1 76 23 96 48 0 0 0.295 0.089 0.372 0.186 0.000 0.000 chr5 136970298 137504326
view SPOCK2 185 57 62 40 0 0 0.717 0.221 0.240 0.155 0.000 0.000 chr10 72054034 72093551
view SPOCK3 71 11 94 51 0 0 0.275 0.043 0.364 0.198 0.000 0.000 chr4 166728384 167239494