Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SRRM4 163 51 49 33 0 0 0.632 0.198 0.190 0.128 0.000 0.000 chr12 118976541 119168051
view SRRM5 207 71 48 31 0 0 0.802 0.275 0.186 0.120 0.000 0.000 chr19 43607088 43619498
view SRRT 209 72 46 31 0 0 0.810 0.279 0.178 0.120 0.000 0.000 chr7 100870103 100893664
view SRR 184 56 66 45 0 0 0.713 0.217 0.256 0.174 0.000 0.000 chr17 2298950 2330260
view SRSF10 191 70 59 33 1 0 0.740 0.271 0.229 0.128 0.004 0.000 chr1 23959347 23985327
view SRSF11 168 65 78 34 0 0 0.651 0.252 0.302 0.132 0.000 0.000 chr1 70216380 70258052
view SRSF12 187 54 65 46 0 0 0.725 0.209 0.252 0.178 0.000 0.000 chr6 89090959 89123071
view SRSF1 170 46 83 56 2 1 0.659 0.178 0.322 0.217 0.008 0.004 chr17 57995919 58012246
view SRSF2 198 70 58 34 1 0 0.767 0.271 0.225 0.132 0.004 0.000 chr17 76729115 76742331
view SRSF3 190 62 63 39 0 0 0.736 0.240 0.244 0.151 0.000 0.000 chr6 36589362 36610600
view SRSF4 183 60 68 41 0 0 0.709 0.233 0.264 0.159 0.000 0.000 chr1 29142743 29186900
view SRSF5 188 59 67 44 0 0 0.729 0.229 0.260 0.171 0.000 0.000 chr14 69762142 69777005
view SRSF6 231 86 23 15 1 1 0.895 0.333 0.089 0.058 0.004 0.004 chr20 43452896 43469243
view SRSF7 212 76 42 26 0 0 0.822 0.295 0.163 0.101 0.000 0.000 chr2 38738599 38756361
view SRSF8 200 65 58 40 0 0 0.775 0.252 0.225 0.155 0.000 0.000 chr11 95061919 95076225
view SRSF9 221 78 37 27 0 0 0.857 0.302 0.143 0.105 0.000 0.000 chr12 120456672 120474748
view SRXN1 210 71 39 28 1 0 0.814 0.275 0.151 0.109 0.004 0.000 chr20 641615 658200
view SRY 0 0 122 51 0 0 0.000 0.000 0.473 0.198 0.000 0.000 chrY 2781855 2792682
view SS18L1 157 37 78 53 0 0 0.609 0.143 0.302 0.205 0.000 0.000 chr20 62138769 62187514
view SS18L2 193 65 63 38 0 0 0.748 0.252 0.244 0.147 0.000 0.000 chr3 42585860 42601934
view SS18 158 47 76 42 0 0 0.612 0.182 0.295 0.163 0.000 0.000 chr18 26011253 26095613
view SSBP1 211 82 41 18 1 1 0.818 0.318 0.159 0.070 0.004 0.004 chr7 141733358 141755488
view SSBP2 102 17 111 65 0 0 0.395 0.066 0.430 0.252 0.000 0.000 chr5 81407804 81756097
view SSBP3 139 32 73 44 0 0 0.539 0.124 0.283 0.171 0.000 0.000 chr1 54220432 54411394
view SSBP4 150 33 97 62 0 0 0.581 0.128 0.376 0.240 0.000 0.000 chr19 18414398 18439562
view SSB 212 74 43 29 0 0 0.822 0.287 0.167 0.112 0.000 0.000 chr2 169793871 169817064
view SSC4D 193 62 58 37 0 0 0.748 0.240 0.225 0.143 0.000 0.000 chr7 76384337 76414697
view SSC5D 205 66 39 27 0 0 0.795 0.256 0.151 0.105 0.000 0.000 chr19 55483436 55524099
view SSH1 165 47 73 46 0 0 0.640 0.182 0.283 0.178 0.000 0.000 chr12 108773191 108862583
view SSH2 115 16 113 75 0 0 0.446 0.062 0.438 0.291 0.000 0.000 chr17 29620938 29935228
view SSH3 165 43 88 58 0 0 0.640 0.167 0.341 0.225 0.000 0.000 chr11 67298530 67317592
view SSMEM1 182 50 73 52 0 0 0.705 0.194 0.283 0.202 0.000 0.000 chr7 130202860 130221844
view SSNA1 193 59 59 40 0 0 0.748 0.229 0.229 0.155 0.000 0.000 chr9 137183676 137195366
view SSPN 191 63 55 35 0 0 0.740 0.244 0.213 0.136 0.000 0.000 chr12 26190573 26239777
view SSR1 216 79 36 21 0 0 0.837 0.306 0.140 0.081 0.000 0.000 chr6 7276143 7318199
view SSR2 177 47 77 54 0 0 0.686 0.182 0.298 0.209 0.000 0.000 chr1 156004048 156025951
view SSR3 199 74 57 29 0 0 0.771 0.287 0.221 0.112 0.000 0.000 chr3 156534553 156560117
view SSR4 92 24 161 76 0 0 0.357 0.093 0.624 0.295 0.000 0.000 chrX 153789668 153803499
view SSRP1 184 47 65 49 0 0 0.713 0.182 0.252 0.190 0.000 0.000 chr11 57320988 57340892
view SSTR1 227 83 27 20 2 1 0.880 0.322 0.105 0.078 0.008 0.004 chr14 38202904 38218067
view SSTR2 226 80 30 24 0 0 0.876 0.310 0.116 0.093 0.000 0.000 chr17 73160010 73181633
view SSTR3 207 66 45 34 0 0 0.802 0.256 0.174 0.132 0.000 0.000 chr22 37199237 37217477
view SSTR4 218 81 39 23 0 0 0.845 0.314 0.151 0.089 0.000 0.000 chr20 23030312 23044237
view SSTR5 174 45 65 42 0 0 0.674 0.174 0.252 0.163 0.000 0.000 chr16 1067747 1086454
view SST 209 71 49 34 0 0 0.810 0.275 0.190 0.132 0.000 0.000 chr3 187663912 187675394
view SSU72L1 170 77 35 18 53 10 0.659 0.298 0.136 0.070 0.205 0.039 chr11 4333245 4344345
view SSU72L2 182 66 53 26 19 11 0.705 0.256 0.205 0.101 0.074 0.043 chr11 4236641 4247706
view SSU72L3 169 71 45 24 42 8 0.655 0.275 0.174 0.093 0.163 0.031 chr11 4324790 4335864
view SSU72L4 159 48 69 37 20 14 0.616 0.186 0.267 0.143 0.078 0.054 chr11 4282084 4293185
view SSU72L5 176 62 61 30 18 12 0.682 0.240 0.236 0.116 0.070 0.047 chr11 4228217 4239287