Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SMIM7 179 50 72 51 0 0 0.694 0.194 0.279 0.198 0.000 0.000 chr19 16641148 16665144
view SMIM8 209 76 45 26 0 0 0.810 0.295 0.174 0.101 0.000 0.000 chr6 87317588 87347329
view SMIM9 88 25 165 75 0 0 0.341 0.097 0.640 0.291 0.000 0.000 chrX 154818348 154839662
view SMKR1 210 65 40 32 0 0 0.814 0.252 0.155 0.124 0.000 0.000 chr7 129497531 129517918
view SMLR1 219 76 38 29 0 0 0.849 0.295 0.147 0.112 0.000 0.000 chr6 130822406 130842135
view SMN1 18 1 66 21 0 0 0.070 0.004 0.256 0.081 0.000 0.000 chr5 70920087 70958015
view SMN2 54 17 147 59 8 1 0.209 0.066 0.570 0.229 0.031 0.004 chr5 70044669 70082595
view SMNDC1 195 74 60 28 0 0 0.756 0.287 0.233 0.109 0.000 0.000 chr10 110285730 110309920
view SMOC1 134 30 85 51 0 0 0.519 0.116 0.329 0.198 0.000 0.000 chr14 69874416 70037366
view SMOC2 89 22 102 46 0 0 0.345 0.085 0.395 0.178 0.000 0.000 chr6 168436184 168672992
view SMOX 213 73 29 20 0 0 0.826 0.283 0.112 0.078 0.000 0.000 chr20 4143828 4192727
view SMO 204 68 43 27 0 0 0.791 0.264 0.167 0.105 0.000 0.000 chr7 129183633 129218545
view SMPD1 193 54 58 44 0 0 0.748 0.209 0.225 0.171 0.000 0.000 chr11 6385474 6399996
view SMPD2 218 80 38 23 0 0 0.845 0.310 0.147 0.089 0.000 0.000 chr6 109435724 109448919
view SMPD3 103 16 118 66 0 0 0.399 0.062 0.457 0.256 0.000 0.000 chr16 68353327 68453508
view SMPD4 165 46 78 48 1 0 0.640 0.178 0.302 0.186 0.004 0.000 chr2 130146408 130186602
view SMPDL3A 220 78 35 25 0 0 0.853 0.302 0.136 0.097 0.000 0.000 chr6 122784258 122814720
view SMPDL3B 215 72 34 25 1 0 0.833 0.279 0.132 0.097 0.004 0.000 chr1 27930000 27964152
view SMPX 79 20 170 77 0 0 0.306 0.078 0.659 0.298 0.000 0.000 chrX 21700978 21763116
view SMR3A 228 89 27 14 1 1 0.884 0.345 0.105 0.054 0.004 0.004 chr4 70355760 70372158
view SMR3B 230 86 28 19 0 0 0.891 0.333 0.109 0.074 0.000 0.000 chr4 70378131 70395244
view SMS 86 23 160 74 0 0 0.333 0.089 0.620 0.287 0.000 0.000 chrX 21935709 21999837
view SMTNL1 182 55 75 49 0 0 0.705 0.213 0.291 0.190 0.000 0.000 chr11 57532595 57555272
view SMTNL2 220 73 29 23 0 0 0.853 0.283 0.112 0.089 0.000 0.000 chr17 4579529 4613319
view SMTN 180 52 68 46 0 0 0.698 0.202 0.264 0.178 0.000 0.000 chr22 31076318 31109624
view SMU1 208 81 42 20 0 0 0.806 0.314 0.163 0.078 0.000 0.000 chr9 33036765 33081674
view SMUG1 218 76 38 28 0 0 0.845 0.295 0.147 0.109 0.000 0.000 chr12 54175366 54193985
view SMURF1 131 33 90 54 0 0 0.508 0.128 0.349 0.209 0.000 0.000 chr7 99022440 99149108
view SMURF2 86 9 145 84 0 0 0.333 0.035 0.562 0.326 0.000 0.000 chr17 64537282 64667307
view SMYD1 168 49 57 32 0 0 0.651 0.190 0.221 0.124 0.000 0.000 chr2 88062825 88118384
view SMYD2 189 62 58 35 0 0 0.733 0.240 0.225 0.136 0.000 0.000 chr1 214276159 214342131
view SMYD3 75 10 72 35 0 0 0.291 0.039 0.279 0.136 0.000 0.000 chr1 245744347 246512279
view SMYD4 194 66 50 32 0 0 0.752 0.256 0.194 0.124 0.000 0.000 chr17 1774485 1834902
view SMYD5 185 60 67 40 1 0 0.717 0.233 0.260 0.155 0.004 0.000 chr2 73209245 73232221
view SNAI1 219 85 37 19 0 0 0.849 0.329 0.143 0.074 0.000 0.000 chr20 49977980 49993886
view SNAI2 198 63 57 39 0 0 0.767 0.244 0.221 0.151 0.000 0.000 chr8 48912598 48926429
view SNAI3 199 62 52 38 0 0 0.771 0.240 0.202 0.147 0.000 0.000 chr16 88672688 88691507
view SNAP23 153 39 99 62 0 0 0.593 0.151 0.384 0.240 0.000 0.000 chr15 42490634 42538058
view SNAP25 169 48 60 38 0 0 0.655 0.186 0.233 0.147 0.000 0.000 chr20 10213830 10312418
view SNAP29 190 60 61 41 0 0 0.736 0.233 0.236 0.159 0.000 0.000 chr22 20854007 20896214
view SNAP47 197 62 50 34 0 0 0.764 0.240 0.194 0.132 0.000 0.000 chr1 227730435 227786226
view SNAP91 182 61 58 35 0 0 0.705 0.236 0.225 0.136 0.000 0.000 chr6 83547885 83714101
view SNAPC1 177 57 68 41 0 0 0.686 0.221 0.264 0.159 0.000 0.000 chr14 61757420 61801428
view SNAPC2 214 69 38 31 0 0 0.829 0.267 0.147 0.120 0.000 0.000 chr19 7915338 7928250
view SNAPC3 153 49 94 50 0 0 0.593 0.190 0.364 0.194 0.000 0.000 chr9 15417876 15466626
view SNAPC4 189 50 47 34 0 0 0.733 0.194 0.182 0.132 0.000 0.000 chr9 136370571 136405170
view SNAPC5 213 77 40 25 1 0 0.826 0.298 0.155 0.097 0.004 0.000 chr15 66488468 66502762
view SNAPIN 199 66 57 37 0 0 0.771 0.256 0.221 0.143 0.000 0.000 chr1 153653703 153666852
view SNCAIP 110 29 96 58 0 0 0.426 0.112 0.372 0.225 0.000 0.000 chr5 122307237 122469219
view SNCA 169 58 63 38 0 0 0.655 0.225 0.244 0.147 0.000 0.000 chr4 89719099 89842161