Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SLC7A8 195 63 44 27 0 0 0.756 0.244 0.171 0.105 0.000 0.000 chr14 23120295 23188660
view SLC7A9 201 67 44 30 0 0 0.779 0.260 0.171 0.116 0.000 0.000 chr19 32825511 32874767
view SLC8A1 117 27 64 40 0 0 0.453 0.105 0.248 0.155 0.000 0.000 chr2 40092270 40457090
view SLC8A2 157 35 75 49 0 0 0.609 0.136 0.291 0.190 0.000 0.000 chr19 47423017 47476893
view SLC8A3 147 39 68 41 0 0 0.570 0.151 0.264 0.159 0.000 0.000 chr14 70039215 70193951
view SLC8B1 141 43 97 51 0 0 0.547 0.167 0.376 0.198 0.000 0.000 chr12 113293771 113340109
view SLC9A1 116 20 113 71 0 0 0.450 0.078 0.438 0.275 0.000 0.000 chr1 27093809 27160125
view SLC9A2 171 52 60 36 0 0 0.663 0.202 0.233 0.140 0.000 0.000 chr2 102614553 102716355
view SLC9A3 108 29 108 43 0 0 0.419 0.112 0.419 0.167 0.000 0.000 chr5 465456 529449
view SLC9A4 190 67 60 33 0 0 0.736 0.260 0.233 0.128 0.000 0.000 chr2 102468226 102538972
view SLC9A5 101 10 139 86 0 0 0.391 0.039 0.539 0.333 0.000 0.000 chr16 67243979 67277191
view SLC9A6 34 8 204 86 0 0 0.132 0.031 0.791 0.333 0.000 0.000 chrX 135980435 136052269
view SLC9A7 59 11 177 82 0 0 0.229 0.043 0.686 0.318 0.000 0.000 chrX 46594251 46764118
view SLC9A8 179 67 63 32 0 0 0.694 0.260 0.244 0.124 0.000 0.000 chr20 49807828 49897242
view SLC9A9 53 6 112 57 0 0 0.205 0.023 0.434 0.221 0.000 0.000 chr3 143260222 143853468
view SLC9B1 158 49 84 46 0 0 0.612 0.190 0.326 0.178 0.000 0.000 chr4 102895928 103024705
view SLC9B2 177 55 69 42 0 0 0.686 0.213 0.267 0.163 0.000 0.000 chr4 103017253 103081761
view SLC9C1 185 56 56 40 0 0 0.717 0.217 0.217 0.155 0.000 0.000 chr3 112135898 112299216
view SLC9C2 157 48 78 43 0 0 0.609 0.186 0.302 0.167 0.000 0.000 chr1 173495460 173608072
view SLCO1A2 154 47 81 46 0 0 0.597 0.182 0.314 0.178 0.000 0.000 chr12 21259600 21339917
view SLCO1B1 158 60 78 36 0 0 0.612 0.233 0.302 0.140 0.000 0.000 chr12 21126194 21244796
view SLCO1B3 141 43 77 40 0 0 0.547 0.167 0.298 0.155 0.000 0.000 chr12 20805705 20921911
view SLCO1C1 147 33 70 41 0 0 0.570 0.128 0.271 0.159 0.000 0.000 chr12 20690332 20758386
view SLCO2A1 170 58 57 35 0 0 0.659 0.225 0.221 0.136 0.000 0.000 chr3 133927701 134034925
view SLCO2B1 185 56 53 35 0 0 0.717 0.217 0.205 0.136 0.000 0.000 chr11 75146107 75211549
view SLCO3A1 94 13 79 51 0 0 0.364 0.050 0.306 0.198 0.000 0.000 chr15 91848708 92170903
view SLCO4A1 215 72 33 25 0 0 0.833 0.279 0.128 0.097 0.000 0.000 chr20 62637503 62677293
view SLCO4C1 176 66 64 31 0 0 0.682 0.256 0.248 0.120 0.000 0.000 chr5 102228986 102301284
view SLCO5A1 139 37 68 45 0 0 0.539 0.143 0.264 0.174 0.000 0.000 chr8 69662046 69839978
view SLCO6A1 170 59 74 39 0 0 0.659 0.229 0.287 0.151 0.000 0.000 chr5 102366774 102504001
view SLF1 181 69 64 32 0 0 0.702 0.267 0.248 0.124 0.000 0.000 chr5 94613669 94702621
view SLF2 164 48 76 46 0 0 0.636 0.186 0.295 0.178 0.000 0.000 chr10 100907963 100970134
view SLFN11 232 92 19 8 0 0 0.899 0.357 0.074 0.031 0.000 0.000 chr17 35345305 35378621
view SLFN12L 179 59 55 30 0 0 0.694 0.229 0.213 0.116 0.000 0.000 chr17 35459254 35542678
view SLFN12 212 77 40 24 0 0 0.822 0.298 0.155 0.093 0.000 0.000 chr17 35405922 35437500
view SLFN13 227 86 28 17 0 0 0.880 0.333 0.109 0.066 0.000 0.000 chr17 35430096 35453766
view SLFN14 213 80 42 22 0 0 0.826 0.310 0.163 0.085 0.000 0.000 chr17 35538985 35565819
view SLFN5 222 85 28 17 0 0 0.860 0.329 0.109 0.066 0.000 0.000 chr17 35238072 35278655
view SLFNL1 214 83 40 19 2 1 0.829 0.322 0.155 0.074 0.008 0.004 chr1 41010597 41026725
view SLIRP 201 73 55 30 0 0 0.779 0.283 0.213 0.116 0.000 0.000 chr14 77703103 77722598
view SLIT1 127 28 65 39 0 0 0.492 0.109 0.252 0.151 0.000 0.000 chr10 96993038 97190959
view SLIT2 114 19 79 54 0 0 0.442 0.074 0.306 0.209 0.000 0.000 chr4 20246905 20625561
view SLIT3 66 10 83 41 0 0 0.256 0.039 0.322 0.159 0.000 0.000 chr5 168656740 169306139
view SLITRK1 201 80 53 23 2 1 0.779 0.310 0.205 0.089 0.008 0.004 chr13 83872205 83887474
view SLITRK2 102 33 146 63 0 0 0.395 0.128 0.566 0.244 0.000 0.000 chrX 145812829 145834856
view SLITRK3 206 68 47 33 1 0 0.798 0.264 0.182 0.128 0.004 0.000 chr3 165181720 165201384
view SLITRK4 103 32 148 68 1 0 0.399 0.124 0.574 0.264 0.004 0.000 chrX 143617790 143641101
view SLITRK5 201 68 53 36 1 0 0.779 0.264 0.205 0.140 0.004 0.000 chr13 87666371 87684616
view SLITRK6 215 80 41 23 1 1 0.833 0.310 0.159 0.089 0.004 0.004 chr13 85787790 85804419
view SLK 187 64 54 32 0 0 0.725 0.248 0.209 0.124 0.000 0.000 chr10 103962140 104034233