Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SLMAP 154 51 85 45 0 0 0.597 0.198 0.329 0.174 0.000 0.000 chr3 57751309 57935003
view SLN 204 75 50 28 2 1 0.791 0.291 0.194 0.109 0.008 0.004 chr11 107702378 107717056
view SLPI 198 67 58 37 0 0 0.767 0.260 0.225 0.143 0.000 0.000 chr20 45247239 45259564
view SLTM 192 65 53 32 0 0 0.744 0.252 0.205 0.124 0.000 0.000 chr15 58874050 58938679
view SLU7 230 91 25 11 0 0 0.891 0.353 0.097 0.043 0.000 0.000 chr5 160396641 160424081
view SLURP1 200 68 53 32 0 0 0.775 0.264 0.205 0.124 0.000 0.000 chr8 142735949 142747406
view SLURP2 222 78 33 24 0 0 0.860 0.302 0.128 0.093 0.000 0.000 chr8 142759338 142774828
view SLX1A 97 38 106 45 14 1 0.376 0.147 0.411 0.174 0.054 0.004 chr16 30188875 30202561
view SLX1B 87 46 45 32 118 22 0.337 0.178 0.174 0.124 0.457 0.085 chr16 29449533 29463219
view SLX4IP 132 37 85 49 0 0 0.512 0.143 0.329 0.190 0.000 0.000 chr20 10430305 10633030
view SLX4 197 69 51 32 0 0 0.764 0.267 0.198 0.124 0.000 0.000 chr16 3576181 3616606
view SLX9 166 51 77 41 0 0 0.643 0.198 0.298 0.159 0.000 0.000 chr21 44935029 44981973
view SMAD1 153 39 87 55 0 0 0.593 0.151 0.337 0.213 0.000 0.000 chr4 145476853 145564176
view SMAD2 154 52 82 44 0 0 0.597 0.202 0.318 0.171 0.000 0.000 chr18 47803957 47935659
view SMAD3 154 37 64 43 0 0 0.597 0.143 0.248 0.167 0.000 0.000 chr15 67060602 67200169
view SMAD4 150 50 80 42 0 0 0.581 0.194 0.310 0.163 0.000 0.000 chr18 51025213 51090042
view SMAD5 146 49 96 48 0 0 0.566 0.190 0.372 0.186 0.000 0.000 chr5 136127845 136187733
view SMAD6 167 53 59 34 0 0 0.647 0.205 0.229 0.132 0.000 0.000 chr15 66697236 66787849
view SMAD7 198 60 46 33 0 0 0.767 0.233 0.178 0.128 0.000 0.000 chr18 48914853 48955965
view SMAD9 178 59 64 37 0 0 0.690 0.229 0.248 0.143 0.000 0.000 chr13 36839831 36925238
view SMAGP 204 67 43 31 0 0 0.791 0.260 0.167 0.120 0.000 0.000 chr12 51239558 51275415
view SMAP1 152 46 71 38 0 0 0.589 0.178 0.275 0.147 0.000 0.000 chr6 70662883 70867003
view SMAP2 199 74 53 27 0 0 0.771 0.287 0.205 0.105 0.000 0.000 chr1 40368727 40428322
view SMARCA1 76 28 169 70 0 0 0.295 0.109 0.655 0.271 0.000 0.000 chrX 129441506 129528490
view SMARCA2 157 48 39 26 0 0 0.609 0.186 0.151 0.101 0.000 0.000 chr9 2010347 2198620
view SMARCA4 142 44 74 36 0 0 0.550 0.171 0.287 0.140 0.000 0.000 chr19 10956030 11067273
view SMARCA5 184 69 65 32 0 0 0.713 0.267 0.252 0.124 0.000 0.000 chr4 143508702 143562486
view SMARCAD1 160 51 83 45 0 0 0.620 0.198 0.322 0.174 0.000 0.000 chr4 94202865 94296292
view SMARCAL1 203 76 49 27 0 0 0.787 0.295 0.190 0.105 0.000 0.000 chr2 216407484 216488053
view SMARCB1 181 54 62 39 0 0 0.702 0.209 0.240 0.151 0.000 0.000 chr22 23781966 23843009
view SMARCC1 109 29 109 54 0 0 0.422 0.112 0.422 0.209 0.000 0.000 chr3 47580269 47786893
view SMARCC2 124 29 109 61 0 0 0.481 0.112 0.422 0.236 0.000 0.000 chr12 56157359 56194483
view SMARCD1 182 56 65 41 0 0 0.705 0.217 0.252 0.159 0.000 0.000 chr12 50080342 50105707
view SMARCD2 176 57 80 47 0 0 0.682 0.221 0.310 0.182 0.000 0.000 chr17 63827081 63847685
view SMARCD3 191 57 60 43 0 0 0.740 0.221 0.233 0.167 0.000 0.000 chr7 151233780 151253694
view SMARCE1 200 81 57 24 0 0 0.775 0.314 0.221 0.093 0.000 0.000 chr17 40619962 40652818
view SMC1A 41 3 197 87 0 0 0.159 0.012 0.764 0.337 0.000 0.000 chrX 53369149 53427654
view SMC1B 179 57 66 39 1 1 0.694 0.221 0.256 0.151 0.004 0.004 chr22 45339063 45418599
view SMC2 138 24 107 74 0 0 0.535 0.093 0.415 0.287 0.000 0.000 chr9 104089309 104146419
view SMC3 163 63 83 38 0 0 0.632 0.244 0.322 0.147 0.000 0.000 chr10 110562695 110611048
view SMC4 165 49 83 50 0 0 0.640 0.190 0.322 0.194 0.000 0.000 chr3 160394650 160439953
view SMC5 182 59 62 39 0 0 0.705 0.229 0.240 0.151 0.000 0.000 chr9 70253978 70359873
view SMC6 126 26 114 67 0 0 0.488 0.101 0.442 0.260 0.000 0.000 chr2 17658812 17758810
view SMCHD1 169 52 62 38 0 0 0.655 0.202 0.240 0.147 0.000 0.000 chr18 2650726 2810017
view SMCO1 198 61 55 40 0 0 0.767 0.236 0.213 0.155 0.000 0.000 chr3 196501879 196520346
view SMCO2 179 62 64 36 0 0 0.694 0.240 0.248 0.140 0.000 0.000 chr12 27441736 27507185
view SMCO3 194 63 62 40 0 0 0.752 0.244 0.240 0.155 0.000 0.000 chr12 14799650 14819182
view SMCO4 205 76 38 24 0 0 0.795 0.295 0.147 0.093 0.000 0.000 chr11 93473472 93548391
view SMCP 208 76 46 27 2 0 0.806 0.295 0.178 0.105 0.008 0.000 chr1 152873322 152890047
view SMCR8 210 74 45 28 1 1 0.814 0.287 0.174 0.109 0.004 0.004 chr17 18310293 18333056