Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
Chr Start End
view SYAP1 82 23 165 74 0 0 0.318 0.089 0.640 0.287 0.000 0.000 chrX 16714612 16770340
view SYBU 161 41 80 56 0 0 0.624 0.159 0.310 0.217 0.000 0.000 chr8 109568978 109649822
view SYCE1L 220 82 35 22 1 0 0.853 0.318 0.136 0.085 0.004 0.000 chr16 77194408 77218215
view SYCE1 191 77 55 23 8 1 0.740 0.298 0.213 0.089 0.031 0.004 chr10 133549847 133570583
view SYCE2 188 57 55 37 0 0 0.729 0.221 0.213 0.143 0.000 0.000 chr19 12893786 12924293
view SYCE3 206 68 48 34 0 0 0.798 0.264 0.186 0.132 0.000 0.000 chr22 50546112 50567919
view SYCN 187 56 65 43 0 0 0.725 0.217 0.252 0.167 0.000 0.000 chr19 39197825 39209263
view SYCP1 155 53 89 47 0 0 0.601 0.205 0.345 0.182 0.000 0.000 chr1 114849863 115000370
view SYCP2L 176 55 54 33 0 0 0.682 0.213 0.209 0.128 0.000 0.000 chr6 10882052 10979309
view SYCP2 137 38 91 47 0 0 0.531 0.147 0.353 0.182 0.000 0.000 chr20 59858571 59938637
view SYCP3 212 81 42 22 2 1 0.822 0.314 0.163 0.085 0.008 0.004 chr12 101723648 101744462
view SYDE1 210 68 39 29 0 0 0.814 0.264 0.151 0.112 0.000 0.000 chr19 15102401 15119974
view SYDE2 198 67 53 32 0 0 0.767 0.260 0.205 0.124 0.000 0.000 chr1 85151889 85206016
view SYF2 149 33 106 70 0 0 0.578 0.128 0.411 0.271 0.000 0.000 chr1 25217276 25237502
view SYK 187 61 46 27 0 0 0.725 0.236 0.178 0.105 0.000 0.000 chr9 90796819 90903549
view SYMPK 195 68 49 28 0 0 0.756 0.264 0.190 0.109 0.000 0.000 chr19 45810410 45868147
view SYN1 78 17 159 70 0 0 0.302 0.066 0.616 0.271 0.000 0.000 chrX 47566901 47624857
view SYN2 131 42 105 56 0 0 0.508 0.163 0.407 0.217 0.000 0.000 chr3 11999388 12197032
view SYN3 92 10 79 49 0 0 0.357 0.039 0.306 0.190 0.000 0.000 chr22 32502820 33063381
view SYNCRIP 181 71 67 27 1 1 0.702 0.275 0.260 0.105 0.004 0.004 chr6 85608976 85647886
view SYNC 158 41 85 52 0 0 0.612 0.159 0.329 0.202 0.000 0.000 chr1 32674906 32707770
view SYNDIG1L 201 70 49 29 0 0 0.779 0.271 0.190 0.112 0.000 0.000 chr14 74400899 74431210
view SYNDIG1 134 32 71 44 0 0 0.519 0.124 0.275 0.171 0.000 0.000 chr20 24464629 24671616
view SYNE1 217 80 29 17 0 0 0.841 0.310 0.112 0.066 0.000 0.000 chr6 152116687 152173312
view SYNE1 86 21 76 42 0 0 0.333 0.081 0.295 0.163 0.000 0.000 chr6 152116687 152642362
view SYNE2 74 16 92 46 0 0 0.287 0.062 0.357 0.178 0.000 0.000 chr14 63848004 64231433
view SYNE3 191 57 42 29 0 0 0.740 0.221 0.163 0.112 0.000 0.000 chr14 95402266 95521650
view SYNE4 187 55 68 48 0 0 0.725 0.213 0.264 0.186 0.000 0.000 chr19 35998307 36013813
view SYNGAP1 153 34 92 59 0 0 0.593 0.132 0.357 0.229 0.000 0.000 chr6 33415065 33458689
view SYNGR1 149 22 92 68 0 0 0.578 0.085 0.357 0.264 0.000 0.000 chr22 39344991 39390575
view SYNGR2 224 79 30 22 0 0 0.868 0.306 0.116 0.085 0.000 0.000 chr17 78163581 78177720
view SYNGR3 213 67 39 33 1 0 0.826 0.260 0.151 0.128 0.004 0.000 chr16 1984970 1999275
view SYNGR4 214 73 40 28 0 0 0.829 0.283 0.155 0.109 0.000 0.000 chr19 48359367 48381377
view SYNJ1 172 65 75 40 0 0 0.667 0.252 0.291 0.155 0.000 0.000 chr21 32623763 32733013
view SYNJ2BP 181 71 61 25 0 0 0.702 0.275 0.236 0.097 0.000 0.000 chr14 70361499 70422090
view SYNJ2 155 42 66 42 0 0 0.601 0.163 0.256 0.163 0.000 0.000 chr6 157976863 158104176
view SYNM 209 75 44 26 1 1 0.810 0.291 0.171 0.101 0.004 0.004 chr15 99100080 99140593
view SYNPO2L 190 69 63 32 1 1 0.736 0.267 0.244 0.124 0.004 0.004 chr10 73639886 73661029
view SYNPO2 154 46 54 30 0 0 0.597 0.178 0.209 0.116 0.000 0.000 chr4 118883854 119066247
view SYNPO 194 69 57 31 0 0 0.752 0.267 0.221 0.120 0.000 0.000 chr5 150635660 150664207
view SYNPR 123 24 70 45 0 0 0.477 0.093 0.271 0.174 0.000 0.000 chr3 63273308 63621924
view SYNRG 174 60 60 30 0 0 0.674 0.233 0.233 0.116 0.000 0.000 chr17 37509807 37614418
view SYPL1 198 72 54 28 0 0 0.767 0.279 0.209 0.109 0.000 0.000 chr7 106085505 106117312
view SYPL2 146 29 100 67 0 0 0.566 0.112 0.388 0.260 0.000 0.000 chr1 109461546 109487134
view SYP 87 25 159 68 0 0 0.337 0.097 0.616 0.264 0.000 0.000 chrX 49182815 49205193
view SYS1 192 68 63 35 1 0 0.744 0.264 0.244 0.136 0.004 0.000 chr20 45358156 45374209
view SYT10 159 51 89 49 0 0 0.616 0.198 0.345 0.190 0.000 0.000 chr12 33369238 33444819
view SYT11 156 42 87 52 0 0 0.605 0.163 0.337 0.202 0.000 0.000 chr1 155854567 155890199
view SYT12 147 44 90 47 0 0 0.570 0.171 0.349 0.182 0.000 0.000 chr11 67018134 67055863
view SYT13 182 66 56 31 0 0 0.705 0.256 0.217 0.120 0.000 0.000 chr11 45235302 45291341