Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TAF11L2 199 70 56 33 1 0 0.771 0.271 0.217 0.128 0.004 0.000 chr5 17493231 17503827
view TAF11L3 205 70 43 25 0 0 0.795 0.271 0.167 0.097 0.000 0.000 chr5 17513367 17523963
view TAF11L4 176 60 67 31 1 0 0.682 0.233 0.260 0.120 0.004 0.000 chr5 17516801 17527397
view TAF11L5 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr5 17520235 17530831
view TAF11L6 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr5 17523669 17534265
view TAF11L7 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr5 17580162 17590758
view TAF11L8 51 21 32 30 151 31 0.198 0.081 0.124 0.116 0.585 0.120 chr5 17585364 17595960
view TAF11L9 56 25 44 41 136 18 0.217 0.097 0.171 0.159 0.527 0.070 chr5 17588798 17599394
view TAF11 213 80 42 22 0 0 0.826 0.310 0.163 0.085 0.000 0.000 chr6 34872462 34893042
view TAF12 150 33 85 58 0 0 0.581 0.128 0.329 0.225 0.000 0.000 chr1 28597850 28648067
view TAF13 206 70 48 32 0 0 0.798 0.271 0.186 0.124 0.000 0.000 chr1 109059140 109081003
view TAF15 160 49 84 48 0 0 0.620 0.190 0.326 0.186 0.000 0.000 chr17 35804484 35852242
view TAF1A 191 69 63 34 0 0 0.740 0.267 0.244 0.132 0.000 0.000 chr1 222553312 222594933
view TAF1B 186 64 53 30 0 0 0.721 0.248 0.205 0.116 0.000 0.000 chr2 9838474 9939416
view TAF1C 236 86 20 17 0 0 0.915 0.333 0.078 0.066 0.000 0.000 chr16 84172855 84192057
view TAF1D 213 78 42 24 0 0 0.826 0.302 0.163 0.093 0.000 0.000 chr11 93730567 93746495
view TAF1L 178 64 75 37 1 1 0.690 0.248 0.291 0.143 0.004 0.004 chr9 32624454 32640669
view TAF1 36 2 198 91 0 0 0.140 0.008 0.767 0.353 0.000 0.000 chrX 71361357 71471005
view TAF2 160 48 84 51 0 0 0.620 0.186 0.326 0.198 0.000 0.000 chr8 119725774 119837841
view TAF3 171 55 60 31 0 0 0.663 0.213 0.233 0.120 0.000 0.000 chr10 7813505 8021631
view TAF4B 136 26 103 67 0 0 0.527 0.101 0.399 0.260 0.000 0.000 chr18 26221445 26396685
view TAF4 156 38 68 45 0 0 0.605 0.147 0.264 0.174 0.000 0.000 chr20 61969798 62070881
view TAF5L 187 61 64 39 0 0 0.725 0.236 0.248 0.151 0.000 0.000 chr1 229588134 229631122
view TAF5 199 74 55 28 0 0 0.771 0.287 0.213 0.109 0.000 0.000 chr10 103362976 103394065
view TAF6L 174 55 69 40 0 0 0.674 0.213 0.267 0.155 0.000 0.000 chr11 62766396 62792342
view TAF6 203 73 52 29 0 0 0.787 0.283 0.202 0.112 0.000 0.000 chr7 100102070 100124358
view TAF7L 77 18 173 81 0 0 0.298 0.070 0.671 0.314 0.000 0.000 chrX 101263257 101296334
view TAF7 209 68 45 35 1 0 0.810 0.264 0.174 0.136 0.004 0.000 chr5 141313490 141325784
view TAF8 226 83 22 14 0 0 0.876 0.322 0.085 0.054 0.000 0.000 chr6 42045524 42088272
view TAF9B 95 34 162 71 1 0 0.368 0.132 0.628 0.275 0.004 0.000 chrX 78124748 78144650
view TAF9 220 82 35 21 2 1 0.853 0.318 0.136 0.081 0.008 0.004 chr5 69359743 69374520
view TAFA1 78 14 96 58 0 0 0.302 0.054 0.372 0.225 0.000 0.000 chr3 67999247 68550621
view TAFA2 110 24 62 38 0 0 0.426 0.093 0.240 0.147 0.000 0.000 chr12 61703273 62197773
view TAFA3 211 70 41 29 0 0 0.818 0.271 0.159 0.112 0.000 0.000 chr1 112713905 112732235
view TAFA4 157 54 67 38 0 0 0.609 0.209 0.260 0.147 0.000 0.000 chr3 68726766 68937547
view TAFA5 128 22 54 28 0 0 0.496 0.085 0.209 0.109 0.000 0.000 chr22 48484553 48756932
view TAFAZZIN 77 17 173 82 0 0 0.298 0.066 0.671 0.318 0.000 0.000 chrX 154406539 154426726
view TAGAP 194 68 57 31 0 0 0.752 0.264 0.221 0.120 0.000 0.000 chr6 159029481 159049991
view TAGLN2 222 81 29 17 0 0 0.860 0.314 0.112 0.066 0.000 0.000 chr1 159913111 159930507
view TAGLN3 231 85 24 17 0 0 0.895 0.329 0.093 0.066 0.000 0.000 chr3 111993922 112018885
view TAGLN 229 83 25 18 1 1 0.888 0.322 0.097 0.070 0.004 0.004 chr11 117194370 117212464
view TAL1 206 72 47 28 0 0 0.798 0.279 0.182 0.109 0.000 0.000 chr1 47211291 47237225
view TAL2 209 70 47 33 1 1 0.810 0.271 0.182 0.128 0.004 0.004 chr9 105657457 105668124
view TALDO1 207 68 39 27 0 0 0.802 0.264 0.151 0.105 0.000 0.000 chr11 742464 770012
view TAMALIN 189 59 62 39 0 0 0.733 0.229 0.240 0.151 0.000 0.000 chr12 52001946 52020889
view TAMM41 185 58 60 42 0 0 0.717 0.225 0.233 0.163 0.000 0.000 chr3 11785442 11851885
view TANC1 128 32 65 38 0 0 0.496 0.124 0.252 0.147 0.000 0.000 chr2 158963640 159237659
view TANC2 132 33 101 58 0 0 0.512 0.128 0.391 0.225 0.000 0.000 chr17 62961235 63432703
view TANGO2 195 58 45 36 0 0 0.756 0.225 0.174 0.140 0.000 0.000 chr22 20016110 20072164
view TANGO6 104 23 100 51 0 0 0.403 0.089 0.388 0.198 0.000 0.000 chr16 68838531 69090182