Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TATDN3 194 72 58 31 0 0 0.752 0.279 0.225 0.120 0.000 0.000 chr1 212786894 212821830
view TAT 185 55 67 46 0 0 0.717 0.213 0.260 0.178 0.000 0.000 chr16 71560660 71582092
view TAX1BP1 180 61 66 40 0 0 0.698 0.236 0.256 0.155 0.000 0.000 chr7 27735162 27834767
view TAX1BP3 203 71 52 31 0 0 0.787 0.275 0.202 0.120 0.000 0.000 chr17 3657895 3673578
view TBATA 204 69 46 30 0 0 0.791 0.267 0.178 0.116 0.000 0.000 chr10 70766238 70790377
view TBC1D10A 193 58 54 38 0 0 0.748 0.225 0.209 0.147 0.000 0.000 chr22 30286990 30331941
view TBC1D10B 155 39 97 61 0 0 0.601 0.151 0.376 0.236 0.000 0.000 chr16 30352102 30375494
view TBC1D10C 185 54 69 48 0 0 0.717 0.209 0.267 0.186 0.000 0.000 chr11 67399083 67415089
view TBC1D12 172 50 71 45 0 0 0.667 0.194 0.275 0.174 0.000 0.000 chr10 94397541 94541332
view TBC1D13 198 66 51 30 0 0 0.767 0.256 0.198 0.116 0.000 0.000 chr9 128782253 128815430
view TBC1D14 151 41 77 50 0 0 0.585 0.159 0.298 0.194 0.000 0.000 chr4 6904826 7038114
view TBC1D15 181 66 64 32 0 0 0.702 0.256 0.248 0.124 0.000 0.000 chr12 71834759 71929313
view TBC1D16 166 43 47 31 0 0 0.643 0.167 0.182 0.120 0.000 0.000 chr17 79927343 80040872
view TBC1D17 209 74 42 24 0 0 0.810 0.287 0.163 0.093 0.000 0.000 chr19 49872702 49893750
view TBC1D19 154 54 95 48 0 0 0.597 0.209 0.368 0.186 0.000 0.000 chr4 26579084 26761223
view TBC1D1 154 43 48 27 0 0 0.597 0.167 0.186 0.105 0.000 0.000 chr4 37886084 38144173
view TBC1D20 200 65 43 29 0 0 0.775 0.252 0.167 0.112 0.000 0.000 chr20 430480 467533
view TBC1D21 190 61 62 38 0 0 0.736 0.236 0.240 0.147 0.000 0.000 chr15 73868564 73894214
view TBC1D22A 56 2 92 53 0 0 0.217 0.008 0.357 0.205 0.000 0.000 chr22 46757650 47180693
view TBC1D22B 110 16 121 78 0 0 0.426 0.062 0.469 0.302 0.000 0.000 chr6 37252772 37337970
view TBC1D23 178 70 66 29 0 0 0.690 0.271 0.256 0.112 0.000 0.000 chr3 100255992 100330238
view TBC1D24 127 24 91 54 0 0 0.492 0.093 0.353 0.209 0.000 0.000 chr16 2470127 2510730
view TBC1D25 84 20 165 78 0 0 0.326 0.078 0.640 0.302 0.000 0.000 chrX 48534714 48567609
view TBC1D26 231 87 24 16 1 0 0.895 0.337 0.093 0.062 0.004 0.000 chr17 15727283 15749782
view TBC1D28 232 87 24 16 0 0 0.899 0.337 0.093 0.062 0.000 0.000 chr17 18629247 18649391
view TBC1D2B 139 33 95 56 0 0 0.539 0.128 0.368 0.217 0.000 0.000 chr15 77989985 78082711
view TBC1D2 182 63 59 31 0 0 0.705 0.244 0.229 0.120 0.000 0.000 chr9 98194011 98260649
view TBC1D30 148 31 84 58 0 0 0.574 0.120 0.326 0.225 0.000 0.000 chr12 64819647 64886033
view TBC1D31 160 39 69 47 0 0 0.620 0.151 0.267 0.182 0.000 0.000 chr8 123067707 123157153
view TBC1D32 145 46 99 47 0 0 0.562 0.178 0.384 0.182 0.000 0.000 chr6 121074494 121339480
view TBC1D3B 99 36 51 31 98 30 0.384 0.140 0.198 0.120 0.380 0.116 chr17 36160683 36181636
view TBC1D3C 42 13 103 42 12 2 0.163 0.050 0.399 0.163 0.047 0.008 chr17 38052693 38073634
view TBC1D3D 33 5 71 20 23 0 0.128 0.019 0.275 0.078 0.089 0.000 chr17 37998976 38019908
view TBC1D3E 16 2 82 29 17 0 0.062 0.008 0.318 0.112 0.066 0.000 chr17 38122951 38143868
view TBC1D3G 74 23 99 46 29 2 0.287 0.089 0.384 0.178 0.112 0.008 chr17 36318884 36339759
view TBC1D3H 78 28 102 51 54 8 0.302 0.109 0.395 0.198 0.209 0.031 chr17 36372531 36393435
view TBC1D3I 91 30 107 57 30 3 0.353 0.116 0.415 0.221 0.116 0.012 chr17 36248639 36269570
view TBC1D3K 56 19 120 51 8 4 0.217 0.074 0.465 0.198 0.031 0.016 chr17 37919415 37940371
view TBC1D3L 8 2 59 21 2 0 0.031 0.008 0.229 0.081 0.008 0.000 chr17 37973155 37994060
view TBC1D3 36 3 95 36 33 3 0.140 0.012 0.368 0.140 0.128 0.012 chr17 38176659 38197555
view TBC1D4 106 20 95 58 0 0 0.411 0.078 0.368 0.225 0.000 0.000 chr13 75278503 75487169
view TBC1D5 80 4 117 78 0 0 0.310 0.016 0.453 0.302 0.000 0.000 chr3 17152168 17747631
view TBC1D7 219 78 28 18 0 0 0.849 0.302 0.109 0.070 0.000 0.000 chr6 13299951 13333537
view TBC1D8B 48 8 193 89 0 0 0.186 0.031 0.748 0.345 0.000 0.000 chrX 106797673 106881150
view TBC1D8 165 59 63 34 0 0 0.640 0.229 0.244 0.132 0.000 0.000 chr2 101002228 101156382
view TBC1D9B 180 53 66 42 0 0 0.698 0.205 0.256 0.163 0.000 0.000 chr5 179857071 179912897
view TBC1D9 148 43 68 40 0 0 0.574 0.167 0.264 0.155 0.000 0.000 chr4 140615782 140761385
view TBCA 176 67 60 30 0 0 0.682 0.260 0.233 0.116 0.000 0.000 chr5 77686166 77781339
view TBCB 223 80 33 23 0 0 0.864 0.310 0.128 0.089 0.000 0.000 chr19 36110468 36130941
view TBCCD1 186 59 67 42 0 0 0.721 0.229 0.260 0.163 0.000 0.000 chr3 186541067 186572339