Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TBCC 192 54 60 46 0 0 0.744 0.209 0.233 0.178 0.000 0.000 chr6 42739498 42751103
view TBCD 158 41 66 44 0 0 0.612 0.159 0.256 0.171 0.000 0.000 chr17 82747065 82950914
view TBCEL 131 34 112 66 0 0 0.508 0.132 0.434 0.256 0.000 0.000 chr11 121019102 121095776
view TBCE 133 34 93 54 0 0 0.516 0.132 0.360 0.209 0.000 0.000 chr1 235362427 235457443
view TBCK 159 60 81 39 0 0 0.616 0.233 0.314 0.151 0.000 0.000 chr4 106036599 106321209
view TBK1 195 70 55 31 0 0 0.756 0.271 0.213 0.120 0.000 0.000 chr12 64447120 64507114
view TBKBP1 192 69 51 27 0 0 0.744 0.267 0.198 0.105 0.000 0.000 chr17 47689161 47717052
view TBL1XR1 152 45 68 42 0 0 0.589 0.174 0.264 0.163 0.000 0.000 chr3 177014344 177202482
view TBL1X 39 2 180 81 0 0 0.151 0.008 0.698 0.314 0.000 0.000 chrX 9460058 9724740
view TBL1Y 0 0 127 54 0 0 0.000 0.000 0.492 0.209 0.000 0.000 chrY 6905697 7096683
view TBL2 191 60 67 45 0 0 0.740 0.233 0.260 0.174 0.000 0.000 chr7 73562537 73583579
view TBL3 214 68 43 36 0 0 0.829 0.264 0.167 0.140 0.000 0.000 chr16 1967053 1987929
view TBPL1 164 51 78 45 0 0 0.636 0.198 0.302 0.174 0.000 0.000 chr6 133948224 133995432
view TBPL2 201 71 46 27 0 0 0.779 0.275 0.178 0.105 0.000 0.000 chr14 55409210 55445616
view TBP 191 62 62 39 0 0 0.740 0.240 0.240 0.151 0.000 0.000 chr6 170549369 170577859
view TBR1 177 57 75 43 0 0 0.686 0.221 0.291 0.167 0.000 0.000 chr2 161411297 161430870
view TBRG1 230 89 28 16 0 0 0.891 0.345 0.109 0.062 0.000 0.000 chr11 124617864 124640926
view TBRG4 197 69 55 30 0 0 0.764 0.267 0.213 0.116 0.000 0.000 chr7 45095100 45116697
view TBX10 189 58 62 41 1 1 0.733 0.225 0.240 0.159 0.004 0.004 chr11 67626303 67644763
view TBX15 181 61 65 36 0 0 0.702 0.236 0.252 0.140 0.000 0.000 chr1 118878047 118993343
view TBX18 201 69 54 35 0 0 0.779 0.267 0.209 0.136 0.000 0.000 chr6 84727496 84769598
view TBX19 190 65 53 28 0 0 0.736 0.252 0.205 0.109 0.000 0.000 chr1 168275877 168319426
view TBX1 215 71 38 29 0 0 0.833 0.275 0.147 0.112 0.000 0.000 chr22 19755778 19772334
view TBX20 150 53 94 44 0 0 0.581 0.205 0.364 0.171 0.000 0.000 chr7 35197430 35259100
view TBX21 196 64 53 33 1 1 0.760 0.248 0.205 0.128 0.004 0.004 chr17 47728236 47751122
view TBX22 99 31 156 71 0 0 0.384 0.120 0.605 0.275 0.000 0.000 chrX 80009753 80036774
view TBX2 218 74 34 25 0 0 0.845 0.287 0.132 0.097 0.000 0.000 chr17 61394843 61414466
view TBX3 217 77 35 22 0 0 0.841 0.298 0.136 0.085 0.000 0.000 chr12 114665255 114689175
view TBX4 204 70 41 26 0 0 0.791 0.271 0.159 0.101 0.000 0.000 chr17 61447422 61490110
view TBX5 194 59 44 30 0 0 0.752 0.229 0.171 0.116 0.000 0.000 chr12 114348911 114411144
view TBX6 191 65 59 33 0 0 0.740 0.252 0.229 0.128 0.000 0.000 chr16 30080793 30096924
view TBXA2R 213 71 36 26 0 0 0.826 0.275 0.140 0.101 0.000 0.000 chr19 3589507 3611875
view TBXAS1 134 31 69 46 0 0 0.519 0.120 0.267 0.178 0.000 0.000 chr7 139824264 140025293
view TBXT 229 87 28 17 0 0 0.888 0.337 0.109 0.066 0.000 0.000 chr6 166152656 166172851
view TC2N 171 49 69 44 0 0 0.663 0.190 0.267 0.171 0.000 0.000 chr14 91774746 91872536
view TCAF1 127 48 110 44 0 0 0.492 0.186 0.426 0.171 0.000 0.000 chr7 143846375 143907176
view TCAF2 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr7 143615974 143735410
view TCAIM 123 17 116 78 0 0 0.477 0.066 0.450 0.302 0.000 0.000 chr3 44333766 44414448
view TCAP 192 61 65 43 0 0 0.744 0.236 0.252 0.167 0.000 0.000 chr17 39660349 39671554
view TCEA1 156 49 79 40 0 0 0.605 0.190 0.306 0.155 0.000 0.000 chr8 53961556 54027448
view TCEA2 191 51 63 50 0 0 0.740 0.198 0.244 0.194 0.000 0.000 chr20 64058198 64077347
view TCEA3 188 57 55 35 0 0 0.729 0.221 0.213 0.136 0.000 0.000 chr1 23375909 23429748
view TCEAL1 92 29 164 74 0 0 0.357 0.112 0.636 0.287 0.000 0.000 chrX 103623975 103635953
view TCEAL2 89 29 166 74 1 0 0.345 0.112 0.643 0.287 0.004 0.000 chrX 102120679 102132712
view TCEAL3 79 22 176 82 0 0 0.306 0.085 0.682 0.318 0.000 0.000 chrX 103602963 103614927
view TCEAL4 89 28 168 77 0 0 0.345 0.109 0.651 0.298 0.000 0.000 chrX 103580515 103592729
view TCEAL5 104 42 148 59 2 0 0.403 0.163 0.574 0.229 0.008 0.000 chrX 103268691 103281750
view TCEAL7 93 30 162 74 0 0 0.360 0.116 0.628 0.287 0.000 0.000 chrX 103325239 103337326
view TCEAL8 101 36 154 68 1 0 0.391 0.140 0.597 0.264 0.004 0.000 chrX 103247995 103260155
view TCEAL9 103 34 151 68 0 0 0.399 0.132 0.585 0.264 0.000 0.000 chrX 103351506 103363462