Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view TERF2 169 50 74 49 0 0 0.655 0.194 0.287 0.190 0.000 0.000 chr16 69350567 69391007
view TERT 195 57 38 28 0 0 0.756 0.221 0.147 0.109 0.000 0.000 chr5 1248167 1300068
view TESC 155 41 77 48 0 0 0.601 0.159 0.298 0.186 0.000 0.000 chr12 117033923 117104416
view TESK1 193 59 61 42 1 1 0.748 0.229 0.236 0.163 0.004 0.004 chr9 35600262 35615033
view TESK2 142 43 86 51 0 0 0.550 0.167 0.333 0.198 0.000 0.000 chr1 45338883 45496163
view TESMIN 149 46 89 46 0 0 0.578 0.178 0.345 0.178 0.000 0.000 chr11 68702440 68756520
view TESPA1 187 67 60 34 0 0 0.725 0.260 0.233 0.132 0.000 0.000 chr12 54943015 54989762
view TES 192 72 58 29 0 0 0.744 0.279 0.225 0.112 0.000 0.000 chr7 116205539 116263783
view TET1 140 41 72 40 0 0 0.543 0.159 0.279 0.155 0.000 0.000 chr10 68555337 68699487
view TET2 173 58 65 36 0 0 0.671 0.225 0.252 0.140 0.000 0.000 chr4 105141876 105284803
view TET3 125 29 93 52 0 0 0.484 0.112 0.360 0.202 0.000 0.000 chr2 73979910 74113176
view TEX101 205 68 53 37 0 0 0.795 0.264 0.205 0.143 0.000 0.000 chr19 43409890 43423597
view TEX10 122 16 117 78 0 0 0.473 0.062 0.453 0.302 0.000 0.000 chr9 100297084 100357942
view TEX11 53 11 173 72 0 0 0.205 0.043 0.671 0.279 0.000 0.000 chrX 70523940 70913711
view TEX12 193 68 64 37 0 0 0.748 0.264 0.248 0.143 0.000 0.000 chr11 112162372 112177556
view TEX13A 87 26 168 77 0 0 0.337 0.101 0.651 0.298 0.000 0.000 chrX 105213929 105225694
view TEX13B 92 23 162 79 1 0 0.357 0.089 0.628 0.306 0.004 0.000 chrX 107975864 107987370
view TEX13C 87 21 170 83 0 0 0.337 0.081 0.659 0.322 0.000 0.000 chrX 125314871 125330214
view TEX13D 101 33 155 70 1 1 0.391 0.128 0.601 0.271 0.004 0.004 chrX 124327660 124341863
view TEX14 161 43 73 48 0 0 0.624 0.167 0.283 0.186 0.000 0.000 chr17 58551678 58697045
view TEX15 146 41 100 60 0 0 0.566 0.159 0.388 0.233 0.000 0.000 chr8 30826544 30918008
view TEX19 189 63 65 39 0 0 0.733 0.244 0.252 0.151 0.000 0.000 chr17 82354247 82368775
view TEX22 183 50 68 48 0 0 0.709 0.194 0.264 0.186 0.000 0.000 chr14 105393538 105418859
view TEX261 215 76 41 28 1 1 0.833 0.295 0.159 0.109 0.004 0.004 chr2 70980942 70999873
view TEX264 149 43 92 51 0 0 0.578 0.167 0.357 0.198 0.000 0.000 chr3 51666252 51709323
view TEX26 206 71 43 27 0 0 0.798 0.275 0.167 0.105 0.000 0.000 chr13 30927656 30980500
view TEX28 0 0 33 16 0 0 0.000 0.000 0.128 0.062 0.000 0.000 chrX 154266265 154300124
view TEX29 207 69 45 30 0 0 0.802 0.267 0.174 0.116 0.000 0.000 chr13 111315642 111349248
view TEX2 111 30 115 66 0 0 0.430 0.116 0.446 0.256 0.000 0.000 chr17 64142227 64268260
view TEX30 226 85 32 20 0 0 0.876 0.329 0.124 0.078 0.000 0.000 chr13 102760888 102778786
view TEX33 208 71 44 29 0 0 0.806 0.275 0.171 0.112 0.000 0.000 chr22 36986125 37012851
view TEX35 199 74 54 26 0 0 0.771 0.287 0.209 0.101 0.000 0.000 chr1 178508109 178527650
view TEX36 204 65 47 35 0 0 0.791 0.252 0.182 0.136 0.000 0.000 chr10 125650694 125688163
view TEX37 200 65 55 39 2 0 0.775 0.252 0.213 0.151 0.008 0.000 chr2 88519649 88534585
view TEX38 208 70 47 33 1 0 0.806 0.271 0.182 0.128 0.004 0.000 chr1 46666854 46678594
view TEX43 211 75 44 27 0 0 0.818 0.291 0.171 0.105 0.000 0.000 chr5 126626705 126641284
view TEX44 218 76 36 25 0 0 0.845 0.295 0.140 0.097 0.000 0.000 chr2 231587864 231599276
view TEX45 217 76 36 25 1 0 0.841 0.295 0.140 0.097 0.004 0.000 chr19 7492548 7513450
view TEX46 216 81 40 22 1 1 0.837 0.314 0.155 0.085 0.004 0.004 chr1 23005834 23020852
view TEX47 225 82 33 23 0 0 0.872 0.318 0.128 0.089 0.000 0.000 chr7 88789106 88800737
view TEX48 210 78 45 26 0 0 0.814 0.302 0.174 0.101 0.000 0.000 chr9 114661434 114687192
view TEX49 160 45 79 47 0 0 0.620 0.174 0.306 0.182 0.000 0.000 chr12 48722435 48770790
view TEX50 201 72 55 31 1 1 0.779 0.279 0.213 0.120 0.004 0.004 chr1 173630338 173642130
view TEX51 198 66 56 36 1 0 0.767 0.256 0.217 0.140 0.004 0.000 chr2 126893890 126907097
view TEX52 216 78 36 24 2 0 0.837 0.302 0.140 0.093 0.008 0.000 chr12 2844046 2862039
view TEX53 199 69 54 32 1 1 0.771 0.267 0.209 0.124 0.004 0.004 chr9 114651304 114662805
view TEX54 206 74 48 30 4 1 0.798 0.287 0.186 0.116 0.016 0.004 chr11 62827321 62837841
view TEX55 233 92 22 11 2 1 0.903 0.357 0.085 0.043 0.008 0.004 chr3 119141165 119156456
view TEX9 189 66 57 32 0 0 0.733 0.256 0.221 0.124 0.000 0.000 chr15 56360426 56435154
view TFAM 217 80 34 21 1 1 0.841 0.310 0.132 0.081 0.004 0.004 chr10 58380410 58404220