Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view SYT14 178 62 54 31 0 0 0.690 0.240 0.209 0.120 0.000 0.000 chr1 209933217 210176315
view SYT15B 170 63 61 36 21 2 0.659 0.244 0.236 0.140 0.081 0.008 chr10 47739717 47768592
view SYT15 142 53 92 44 6 0 0.550 0.205 0.357 0.171 0.023 0.000 chr10 46574128 46597064
view SYT16 86 9 94 62 0 0 0.333 0.035 0.364 0.240 0.000 0.000 chr14 61807703 62117550
view SYT17 161 40 61 41 0 0 0.624 0.155 0.236 0.159 0.000 0.000 chr16 19163240 19273332
view SYT1 30 4 122 52 0 0 0.116 0.016 0.473 0.202 0.000 0.000 chr12 78859774 79457008
view SYT2 137 29 84 50 0 0 0.531 0.112 0.326 0.194 0.000 0.000 chr1 202585596 202715454
view SYT3 193 54 61 47 0 0 0.748 0.209 0.236 0.182 0.000 0.000 chr19 50616977 50644881
view SYT4 222 90 35 15 0 0 0.860 0.349 0.136 0.058 0.000 0.000 chr18 43262892 43282490
view SYT5 204 67 48 34 0 0 0.791 0.260 0.186 0.132 0.000 0.000 chr19 55166196 55185289
view SYT6 212 74 31 19 0 0 0.822 0.287 0.120 0.074 0.000 0.000 chr1 114084292 114158869
view SYT7 94 13 118 63 0 0 0.364 0.050 0.457 0.244 0.000 0.000 chr11 61508714 61586076
view SYT8 227 77 23 21 2 1 0.880 0.298 0.089 0.081 0.008 0.004 chr11 1829990 1842521
view SYT9 135 29 54 35 0 0 0.523 0.112 0.209 0.136 0.000 0.000 chr11 7246904 7474043
view SYTL1 188 55 55 35 0 0 0.729 0.213 0.213 0.136 0.000 0.000 chr1 27337022 27358932
view SYTL2 182 67 56 29 0 0 0.705 0.260 0.217 0.112 0.000 0.000 chr11 85689229 85816141
view SYTL3 145 26 69 49 0 0 0.562 0.101 0.267 0.190 0.000 0.000 chr6 158645054 158769871
view SYTL4 81 21 157 71 0 0 0.314 0.081 0.609 0.275 0.000 0.000 chrX 100669491 100737121
view SYTL5 62 9 173 81 0 0 0.240 0.035 0.671 0.314 0.000 0.000 chrX 38001553 38133816
view SYVN1 205 69 50 34 0 0 0.795 0.267 0.194 0.132 0.000 0.000 chr11 65122279 65139519
view SZRD1 159 47 83 47 0 0 0.616 0.182 0.322 0.182 0.000 0.000 chr1 16362242 16403145
view SZT2 144 40 96 53 0 0 0.558 0.155 0.372 0.205 0.000 0.000 chr1 43384899 43459247
view TAAR1 217 84 40 20 0 0 0.841 0.326 0.155 0.078 0.000 0.000 chr6 132638312 132664182
view TAAR2 225 84 29 17 1 1 0.872 0.326 0.112 0.066 0.004 0.004 chr6 132612150 132629275
view TAAR5 221 84 32 19 1 0 0.857 0.326 0.124 0.074 0.004 0.000 chr6 132583592 132594741
view TAAR6 236 91 18 12 3 1 0.915 0.353 0.070 0.047 0.012 0.004 chr6 132565322 132576359
view TAAR8 217 77 40 28 1 0 0.841 0.298 0.155 0.109 0.004 0.000 chr6 132547672 132558756
view TAAR9 214 80 43 25 0 0 0.829 0.310 0.167 0.097 0.000 0.000 chr6 132533277 132544336
view TAB1 155 32 83 56 0 0 0.601 0.124 0.322 0.217 0.000 0.000 chr22 39394780 39436882
view TAB2 182 58 66 44 0 0 0.705 0.225 0.256 0.171 0.000 0.000 chr6 149312712 149416607
view TAB3 86 24 161 72 0 0 0.333 0.093 0.624 0.279 0.000 0.000 chrX 30822442 30894254
view TAC1 213 81 42 23 0 0 0.826 0.314 0.163 0.089 0.000 0.000 chr7 97727086 97745472
view TAC3 173 45 78 54 0 0 0.671 0.174 0.302 0.209 0.000 0.000 chr12 57005000 57021529
view TAC4 202 65 52 36 1 1 0.783 0.252 0.202 0.140 0.004 0.004 chr17 49833300 49853069
view TACC1 172 55 74 44 0 0 0.667 0.213 0.287 0.171 0.000 0.000 chr8 38782236 38858028
view TACC2 152 37 44 31 0 0 0.589 0.143 0.171 0.120 0.000 0.000 chr10 121984163 122259542
view TACC3 171 45 78 51 0 0 0.663 0.174 0.302 0.198 0.000 0.000 chr4 1716521 1750171
view TACO1 150 35 99 65 0 0 0.581 0.136 0.384 0.252 0.000 0.000 chr17 63595895 63613365
view TACR1 140 37 60 35 0 0 0.543 0.143 0.233 0.136 0.000 0.000 chr2 75041463 75204520
view TACR2 190 54 63 47 1 1 0.736 0.209 0.244 0.182 0.004 0.004 chr10 69398903 69421918
view TACR3 139 35 68 41 0 0 0.539 0.136 0.264 0.159 0.000 0.000 chr4 103581031 103724985
view TACSTD2 214 74 43 31 0 0 0.829 0.287 0.167 0.120 0.000 0.000 chr1 58570433 58582252
view TADA1 208 72 48 31 0 0 0.806 0.279 0.186 0.120 0.000 0.000 chr1 166851510 166881264
view TADA2A 175 64 60 30 0 0 0.678 0.248 0.233 0.116 0.000 0.000 chr17 37401886 37484725
view TADA2B 209 70 47 33 0 0 0.810 0.271 0.182 0.128 0.000 0.000 chr4 7038372 7062952
view TADA3 204 72 50 29 0 0 0.791 0.279 0.194 0.112 0.000 0.000 chr3 9774967 9797473
view TAF10 223 81 33 22 0 0 0.864 0.314 0.128 0.085 0.000 0.000 chr11 6601294 6617216
view TAF11L10 176 46 68 48 1 0 0.682 0.178 0.264 0.186 0.004 0.000 chr5 17592232 17602828
view TAF11L13 203 63 51 38 0 0 0.787 0.244 0.198 0.147 0.000 0.000 chr5 17627088 17637684
view TAF11L14 198 56 55 44 0 0 0.767 0.217 0.213 0.171 0.000 0.000 chr5 17629460 17640053