JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
USP16_chr21_29019668_29059488	0/0	g0297	1	0	1	0	0	0	USP16	chr21	29019668	29059488
USP17L10_chr4_9205657_9217249	1/0	g0000	5	0	2	2	0	0	USP17L10	chr4	9205657	9217249
USP17L11_chr4_9210405_9221997	0/0	g0000	2	0	2	0	0	0	USP17L11	chr4	9210405	9221997
USP17L12_chr4_9215152_9226744	0/0	g0000	6	0	2	4	0	0	USP17L12	chr4	9215152	9226744
USP17L13_chr4_9219896_9231488	1/0	g0000	9	0	6	2	0	0	USP17L13	chr4	9219896	9231488
USP17L15_chr4_9229385_9241046	0/0	g0000	110	18	32	36	10	14	USP17L15	chr4	9229385	9241046
USP17L17_chr4_9238879_9250471	1/0	g0000	199	34	42	82	14	26	USP17L17	chr4	9238879	9250471
USP17L18_chr4_9243630_9255222	0/0	g0000	210	34	42	94	14	26	USP17L18	chr4	9243630	9255222
USP17L19_chr4_9248378_9259970	0/0	g0000	206	38	40	90	12	26	USP17L19	chr4	9248378	9259970
USP17L1_chr8_7327387_7338979	1/1	g0000	416	60	74	218	16	46	USP17L1	chr8	7327387	7338979
USP17L20_chr4_9253124_9264716	0/0	g0000	234	38	42	114	10	30	USP17L20	chr4	9253124	9264716
USP17L21_chr4_9257872_9269464	0/0	g0000	174	32	38	74	8	22	USP17L21	chr4	9257872	9269464
USP17L25_chr4_9324911_9336503	0/0	g0000	32	4	0	24	0	4	USP17L25	chr4	9324911	9336503
USP17L26_chr4_9329658_9341250	0/0	g0000	102	14	22	52	4	10	USP17L26	chr4	9329658	9341250
USP17L27_chr4_9339148_9350740	0/0	g0000	90	14	6	60	4	6	USP17L27	chr4	9339148	9350740
USP17L28_chr4_9343893_9355485	0/0	g0000	88	12	18	50	4	4	USP17L28	chr4	9343893	9355485
USP17L29_chr4_9348638_9360230	0/0	g0000	146	36	36	54	6	14	USP17L29	chr4	9348638	9360230
USP17L2_chr8_12131435_12143849	1/0	g0000	195	42	34	96	4	18	USP17L2	chr8	12131435	12143849
USP17L30_chr4_9358129_9369721	0/0	g0000	330	68	68	142	16	36	USP17L30	chr4	9358129	9369721
USP17L4_chr8_7332115_7343707	1/1	g0000	390	58	70	202	14	44	USP17L4	chr8	7332115	7343707
USP17L5_chr4_9334403_9345995	0/0	g0000	130	14	22	74	6	14	USP17L5	chr4	9334403	9345995
USP17L7_chr8_12127417_12139099	1/1	g0000	194	36	32	102	4	18	USP17L7	chr8	12127417	12139099
USP17L8_chr8_7966661_7978253	1/0	g0000	3	2	0	0	0	0	USP17L8	chr8	7966661	7978253
USP18_chr22_18145170_18182397	0/0	g0001	13	0	4	9	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0002	5	0	1	3	1	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0003	3	0	1	2	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0004	3	0	0	3	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0005	2	2	0	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0006	2	0	2	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0007	2	0	0	0	0	2	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0008	2	0	0	2	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0009	2	0	2	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0010	2	2	0	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0011	2	2	0	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0012	2	2	0	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0013	2	1	1	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0014	2	0	0	2	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0015	2	0	1	1	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0016	2	0	2	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0017	2	0	0	0	0	2	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0018	2	0	0	2	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0019	2	0	0	2	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0020	2	1	0	1	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0021	2	0	2	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0022	2	0	1	1	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0023	2	0	2	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0024	2	2	0	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0025	2	0	2	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0026	2	0	2	0	0	0	USP18	chr22	18145170	18182397
USP18_chr22_18145170_18182397	0/0	g0027	2	2	0	0	0	0	USP18	chr22	18145170	18182397