Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
A1BG_chr19_58340183_58358492	HG01943	hp1	a0001	a0001c0001	a0001c0001t0020	a0001c0001t0020g0050	PEL	AMR	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PEL	AMR	A1BG	chr19	58340183	58358492
A1CF_chr10_50794409_50890627	HG01943	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0236	PEL	AMR	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0220	PEL	AMR	A1CF	chr10	50794409	50890627
A3GALT2_chr1_33301766_33326098	HG01943	hp1	a0001	a0001c0001	a0001c0001t0000	a0001c0001t0000g0222	PEL	AMR	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	HG01943	hp2	a0001	a0001c0001	a0001c0001t0000	a0001c0001t0000g0241	PEL	AMR	A3GALT2	chr1	33301766	33326098
A4GALT_chr22_42687121_42725870	HG01943	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0133	PEL	AMR	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	HG01943	hp2	a0001	a0001c0002	a0001c0002t0004	a0001c0002t0004g0090	PEL	AMR	A4GALT	chr22	42687121	42725870
AAAS_chr12_53302460_53326610	HG01943	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0029	PEL	AMR	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0061	PEL	AMR	AAAS	chr12	53302460	53326610
AACS_chr12_125060435_125148316	HG01943	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0294	PEL	AMR	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	HG01943	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0286	PEL	AMR	AACS	chr12	125060435	125148316
AADACL2_chr3_151728927_151766339	HG01943	hp1	a0002	a0002c0002	a0002c0002t0004	a0002c0002t0004g0007	PEL	AMR	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0015	PEL	AMR	AADACL2	chr3	151728927	151766339
AADACL4_chr1_12639085_12672076	HG01943	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0240	PEL	AMR	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0167	PEL	AMR	AADACL4	chr1	12639085	12672076
AADAC_chr3_151809116_151833488	HG01943	hp1	a0001	a0001c0004	a0001c0004t0002	a0001c0004t0002g0068	PEL	AMR	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	HG01943	hp2	a0001	a0001c0004	a0001c0004t0002	a0001c0004t0002g0002	PEL	AMR	AADAC	chr3	151809116	151833488
AAGAB_chr15_67195667_67259661	HG01943	hp1	a0002	a0002c0002	a0002c0002t0003	a0002c0002t0003g0193	PEL	AMR	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0309	PEL	AMR	AAGAB	chr15	67195667	67259661
AAK1_chr2_69452997_69648739	HG01943	hp1	a0002	a0002c0002	a0002c0002t0003	a0002c0002t0003g0227	PEL	AMR	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	HG01943	hp2	a0001	a0001c0001	a0001c0001t0136	a0001c0001t0136g0212	PEL	AMR	AAK1	chr2	69452997	69648739
AAMP_chr2_218259129_218275137	HG01943	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PEL	AMR	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	PEL	AMR	AAMP	chr2	218259129	218275137
AARD_chr8_116933207_116949487	HG01943	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PEL	AMR	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PEL	AMR	AARD	chr8	116933207	116949487
AARS1_chr16_70247298_70294506	HG01943	hp1	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0182	PEL	AMR	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	HG01943	hp2	a0001	a0001c0016	a0001c0016t0001	a0001c0016t0001g0097	PEL	AMR	AARS1	chr16	70247298	70294506
AARS2_chr6_44293731_44318347	HG01943	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PEL	AMR	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	HG01943	hp2	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0004	PEL	AMR	AARS2	chr6	44293731	44318347
AARSD1_chr17_42945526_42969454	HG01943	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	PEL	AMR	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	PEL	AMR	AARSD1	chr17	42945526	42969454
AASDHPPT_chr11_106072662_106103695	HG01943	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0088	PEL	AMR	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0043	PEL	AMR	AASDHPPT	chr11	106072662	106103695
AASDH_chr4_56333290_56392491	HG01943	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0217	PEL	AMR	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0081	PEL	AMR	AASDH	chr4	56333290	56392491
AATK_chr17_81112295_81171221	HG01943	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0331	PEL	AMR	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	HG01943	hp2	a0003	a0003c0003	a0003c0003t0002	a0003c0003t0002g0162	PEL	AMR	AATK	chr17	81112295	81171221
ABAT_chr16_8669617_8789570	HG01943	hp1	a0002	a0002c0005	a0002c0005t0001	a0002c0005t0001g0237	PEL	AMR	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	HG01943	hp2	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0234	PEL	AMR	ABAT	chr16	8669617	8789570
ABCA12_chr2_214926542_215143626	HG01943	hp1	a0007	a0007c0024	a0007c0024t0005	a0007c0024t0005g0093	PEL	AMR	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	HG01943	hp2	a0001	a0001c0004	a0001c0004t0002	a0001c0004t0002g0137	PEL	AMR	ABCA12	chr2	214926542	215143626
ABCA2_chr9_137002234_137033237	HG01943	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0004	PEL	AMR	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	HG01943	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0010	PEL	AMR	ABCA2	chr9	137002234	137033237
ABCA3_chr16_2270881_2345728	HG01943	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0125	PEL	AMR	ABCA3	chr16	2270881	2345728
ABCA3_chr16_2270881_2345728	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0035	PEL	AMR	ABCA3	chr16	2270881	2345728
ABCA4_chr1_93987834_94126148	HG01943	hp1	a0013	a0013c0047	a0013c0047t0001	a0013c0047t0001g0077	PEL	AMR	ABCA4	chr1	93987834	94126148
ABCA4_chr1_93987834_94126148	HG01943	hp2	a0001	a0001c0003	a0001c0003t0001	a0001c0003t0001g0289	PEL	AMR	ABCA4	chr1	93987834	94126148
ABCA6_chr17_69073702_69146895	HG01943	hp1	a0004	a0004c0004	a0004c0004t0002	a0004c0004t0002g0145	PEL	AMR	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	HG01943	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0111	PEL	AMR	ABCA6	chr17	69073702	69146895