Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
A1BG_chr19_58340183_58358492	HG03486	hp1	a0006	a0006c0007	a0006c0007t0002	a0006c0007t0002g0047	MSL	AFR	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	HG03486	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0009	MSL	AFR	A1BG	chr19	58340183	58358492
A1CF_chr10_50794409_50890627	HG03486	hp1	a0001	a0001c0001	a0001c0001t0016	a0001c0001t0016g0041	MSL	AFR	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	HG03486	hp2	a0001	a0001c0001	a0001c0001t0014	a0001c0001t0014g0252	MSL	AFR	A1CF	chr10	50794409	50890627
A2ML1_chr12_8817621_8881787	HG03486	hp1	a0004	a0004c0014	a0004c0014t0004	a0004c0014t0004g0238	MSL	AFR	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	HG03486	hp2	a0013	a0013c0021	a0013c0021t0002	a0013c0021t0002g0160	MSL	AFR	A2ML1	chr12	8817621	8881787
A2M_chr12_9062708_9120919	HG03486	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0070	MSL	AFR	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	HG03486	hp2	a0005	a0005c0007	a0005c0007t0001	a0005c0007t0001g0244	MSL	AFR	A2M	chr12	9062708	9120919
A3GALT2_chr1_33301766_33326098	HG03486	hp1	a0001	a0001c0001	a0001c0001t0000	a0001c0001t0000g0076	MSL	AFR	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	HG03486	hp2	a0001	a0001c0001	a0001c0001t0000	a0001c0001t0000g0122	MSL	AFR	A3GALT2	chr1	33301766	33326098
A4GALT_chr22_42687121_42725870	HG03486	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0381	MSL	AFR	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	HG03486	hp2	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0232	MSL	AFR	A4GALT	chr22	42687121	42725870
A4GNT_chr3_138118713_138137390	HG03486	hp1	a0005	a0005c0008	a0005c0008t0004	a0005c0008t0004g0028	MSL	AFR	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	HG03486	hp2	a0002	a0002c0004	a0002c0004t0008	a0002c0004t0008g0105	MSL	AFR	A4GNT	chr3	138118713	138137390
AAAS_chr12_53302460_53326610	HG03486	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0004	MSL	AFR	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	HG03486	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0003	MSL	AFR	AAAS	chr12	53302460	53326610
AACS_chr12_125060435_125148316	HG03486	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0008	MSL	AFR	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	HG03486	hp2	a0002	a0002c0010	a0002c0010t0001	a0002c0010t0001g0018	MSL	AFR	AACS	chr12	125060435	125148316
AADACL3_chr1_12711110_12733760	HG03486	hp1	a0007	a0007c0017	a0007c0017t0016	a0007c0017t0016g0080	MSL	AFR	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	HG03486	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	MSL	AFR	AADACL3	chr1	12711110	12733760
AADACL4_chr1_12639085_12672076	HG03486	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0041	MSL	AFR	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	HG03486	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0036	MSL	AFR	AADACL4	chr1	12639085	12672076
AADAT_chr4_170055222_170094956	HG03486	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0110	MSL	AFR	AADAT	chr4	170055222	170094956
AADAT_chr4_170055222_170094956	HG03486	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0032	MSL	AFR	AADAT	chr4	170055222	170094956
AAGAB_chr15_67195667_67259661	HG03486	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0255	MSL	AFR	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	HG03486	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0272	MSL	AFR	AAGAB	chr15	67195667	67259661
AAK1_chr2_69452997_69648739	HG03486	hp1	a0002	a0002c0005	a0002c0005t0018	a0002c0005t0018g0103	MSL	AFR	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	HG03486	hp2	a0002	a0002c0005	a0002c0005t0123	a0002c0005t0123g0183	MSL	AFR	AAK1	chr2	69452997	69648739
AAMDC_chr11_77816144_77877352	HG03486	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0188	MSL	AFR	AAMDC	chr11	77816144	77877352
AAMDC_chr11_77816144_77877352	HG03486	hp2	a0002	a0002c0003	a0002c0003t0001	a0002c0003t0001g0084	MSL	AFR	AAMDC	chr11	77816144	77877352
AAMP_chr2_218259129_218275137	HG03486	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0019	MSL	AFR	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	HG03486	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0002	MSL	AFR	AAMP	chr2	218259129	218275137
AANAT_chr17_76462603_76475117	HG03486	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	MSL	AFR	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	HG03486	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	MSL	AFR	AANAT	chr17	76462603	76475117
AAR2_chr20_36231478_36261933	HG03486	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0006	MSL	AFR	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	HG03486	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0132	MSL	AFR	AAR2	chr20	36231478	36261933
AARD_chr8_116933207_116949487	HG03486	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0003	MSL	AFR	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	HG03486	hp2	a0002	a0002c0002	a0002c0002t0004	a0002c0002t0004g0007	MSL	AFR	AARD	chr8	116933207	116949487
AARS1_chr16_70247298_70294506	HG03486	hp1	a0002	a0002c0004	a0002c0004t0001	a0002c0004t0001g0343	MSL	AFR	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	HG03486	hp2	a0003	a0003c0005	a0003c0005t0001	a0003c0005t0001g0153	MSL	AFR	AARS1	chr16	70247298	70294506
AARS2_chr6_44293731_44318347	HG03486	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0011	MSL	AFR	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	HG03486	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0025	MSL	AFR	AARS2	chr6	44293731	44318347
AARSD1_chr17_42945526_42969454	HG03486	hp1	a0004	a0004c0005	a0004c0005t0001	a0004c0005t0001g0119	MSL	AFR	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	HG03486	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0118	MSL	AFR	AARSD1	chr17	42945526	42969454
AASDHPPT_chr11_106072662_106103695	HG03486	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0015	MSL	AFR	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	HG03486	hp2	a0001	a0001c0001	a0001c0001t0007	a0001c0001t0007g0017	MSL	AFR	AASDHPPT	chr11	106072662	106103695
AASS_chr7_122068549_122149249	HG03486	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	MSL	AFR	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	HG03486	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0002	MSL	AFR	AASS	chr7	122068549	122149249
AATK_chr17_81112295_81171221	HG03486	hp1	a0019	a0019c0067	a0019c0067t0004	a0019c0067t0004g0333	MSL	AFR	AATK	chr17	81112295	81171221
AATK_chr17_81112295_81171221	HG03486	hp2	a0007	a0007c0008	a0007c0008t0015	a0007c0008t0015g0201	MSL	AFR	AATK	chr17	81112295	81171221