Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Status by Sample

Sampleid

* Sampleid must be selected for search to work. Choose specific sample identifier (e.g., HG00096, NA18525).

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Genename

e.g. ALDH2, HBB.

Gpopname

Filter by gpopulation group.

Popname

Filter by population group.

Chr

Chromosome name (e.g., chr11).

Start

Start genomic position (GRCh38).

End

End genomic position (GRCh38).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	sampleid	ID haplotypeid	ahapid	achapid	acthapid	actghapid	popname	gpopname	genename	chr	start	end
A1BG_chr19_58340183_58358492	NA18522	hp1	a0001	a0001c0001	a0001c0001t0007	a0001c0001t0007g0014	YRI	AFR	A1BG	chr19	58340183	58358492
A1BG_chr19_58340183_58358492	NA18522	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0033	YRI	AFR	A1BG	chr19	58340183	58358492
A1CF_chr10_50794409_50890627	NA18522	hp1	a0001	a0001c0002	a0001c0002t0004	a0001c0002t0004g0256	YRI	AFR	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	NA18522	hp2	a0001	a0001c0001	a0001c0001t0005	a0001c0001t0005g0202	YRI	AFR	A1CF	chr10	50794409	50890627
A2ML1_chr12_8817621_8881787	NA18522	hp1	a0004	a0004c0064	a0004c0064t0002	a0004c0064t0002g0351	YRI	AFR	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	NA18522	hp2	a0017	a0017c0018	a0017c0018t0001	a0017c0018t0001g0168	YRI	AFR	A2ML1	chr12	8817621	8881787
A2M_chr12_9062708_9120919	NA18522	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0071	YRI	AFR	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	NA18522	hp2	a0001	a0001c0005	a0001c0005t0002	a0001c0005t0002g0142	YRI	AFR	A2M	chr12	9062708	9120919
A3GALT2_chr1_33301766_33326098	NA18522	hp1	a0001	a0001c0001	a0001c0001t0000	a0001c0001t0000g0162	YRI	AFR	A3GALT2	chr1	33301766	33326098
A3GALT2_chr1_33301766_33326098	NA18522	hp2	a0001	a0001c0001	a0001c0001t0000	a0001c0001t0000g0007	YRI	AFR	A3GALT2	chr1	33301766	33326098
A4GNT_chr3_138118713_138137390	NA18522	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0132	YRI	AFR	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	NA18522	hp2	a0001	a0001c0003	a0001c0003t0005	a0001c0003t0005g0016	YRI	AFR	A4GNT	chr3	138118713	138137390
AAAS_chr12_53302460_53326610	NA18522	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0070	YRI	AFR	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	NA18522	hp2	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0171	YRI	AFR	AAAS	chr12	53302460	53326610
AACS_chr12_125060435_125148316	NA18522	hp1	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0007	YRI	AFR	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	NA18522	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0056	YRI	AFR	AACS	chr12	125060435	125148316
AADACL2_chr3_151728927_151766339	NA18522	hp1	a0002	a0002c0002	a0002c0002t0012	a0002c0002t0012g0020	YRI	AFR	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	NA18522	hp2	a0001	a0001c0001	a0001c0001t0017	a0001c0001t0017g0029	YRI	AFR	AADACL2	chr3	151728927	151766339
AADACL3_chr1_12711110_12733760	NA18522	hp1	a0005	a0005c0006	a0005c0006t0006	a0005c0006t0006g0007	YRI	AFR	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	NA18522	hp2	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0051	YRI	AFR	AADACL3	chr1	12711110	12733760
AADACL4_chr1_12639085_12672076	NA18522	hp1	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0035	YRI	AFR	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	NA18522	hp2	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0064	YRI	AFR	AADACL4	chr1	12639085	12672076
AADAC_chr3_151809116_151833488	NA18522	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0019	YRI	AFR	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	NA18522	hp2	a0002	a0002c0002	a0002c0002t0001	a0002c0002t0001g0016	YRI	AFR	AADAC	chr3	151809116	151833488
AADAT_chr4_170055222_170094956	NA18522	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0007	YRI	AFR	AADAT	chr4	170055222	170094956
AADAT_chr4_170055222_170094956	NA18522	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0096	YRI	AFR	AADAT	chr4	170055222	170094956
AAGAB_chr15_67195667_67259661	NA18522	hp1	a0002	a0002c0002	a0002c0002t0007	a0002c0002t0007g0131	YRI	AFR	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	NA18522	hp2	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0260	YRI	AFR	AAGAB	chr15	67195667	67259661
AAMP_chr2_218259129_218275137	NA18522	hp1	a0005	a0005c0008	a0005c0008t0001	a0005c0008t0001g0032	YRI	AFR	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	NA18522	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0006	YRI	AFR	AAMP	chr2	218259129	218275137
AANAT_chr17_76462603_76475117	NA18522	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0016	YRI	AFR	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	NA18522	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0001	YRI	AFR	AANAT	chr17	76462603	76475117
AAR2_chr20_36231478_36261933	NA18522	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0005	YRI	AFR	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	NA18522	hp2	a0001	a0001c0004	a0001c0004t0005	a0001c0004t0005g0033	YRI	AFR	AAR2	chr20	36231478	36261933
AARS2_chr6_44293731_44318347	NA18522	hp1	a0001	a0001c0002	a0001c0002t0002	a0001c0002t0002g0037	YRI	AFR	AARS2	chr6	44293731	44318347
AARS2_chr6_44293731_44318347	NA18522	hp2	a0002	a0002c0003	a0002c0003t0024	a0002c0003t0024g0074	YRI	AFR	AARS2	chr6	44293731	44318347
AARSD1_chr17_42945526_42969454	NA18522	hp1	a0001	a0001c0002	a0001c0002t0001	a0001c0002t0001g0008	YRI	AFR	AARSD1	chr17	42945526	42969454
AARSD1_chr17_42945526_42969454	NA18522	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0005	YRI	AFR	AARSD1	chr17	42945526	42969454
AASDHPPT_chr11_106072662_106103695	NA18522	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0012	YRI	AFR	AASDHPPT	chr11	106072662	106103695
AASDHPPT_chr11_106072662_106103695	NA18522	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0016	YRI	AFR	AASDHPPT	chr11	106072662	106103695
AASDH_chr4_56333290_56392491	NA18522	hp1	a0007	a0007c0008	a0007c0008t0001	a0007c0008t0001g0060	YRI	AFR	AASDH	chr4	56333290	56392491
AASDH_chr4_56333290_56392491	NA18522	hp2	a0003	a0003c0003	a0003c0003t0002	a0003c0003t0002g0042	YRI	AFR	AASDH	chr4	56333290	56392491
AASS_chr7_122068549_122149249	NA18522	hp1	a0001	a0001c0001	a0001c0001t0004	a0001c0001t0004g0002	YRI	AFR	AASS	chr7	122068549	122149249
AASS_chr7_122068549_122149249	NA18522	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0019	YRI	AFR	AASS	chr7	122068549	122149249
AATF_chr17_36943954_37061871	NA18522	hp1	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0103	YRI	AFR	AATF	chr17	36943954	37061871
AATF_chr17_36943954_37061871	NA18522	hp2	a0001	a0001c0001	a0001c0001t0001	a0001c0001t0001g0165	YRI	AFR	AATF	chr17	36943954	37061871
ABAT_chr16_8669617_8789570	NA18522	hp1	a0002	a0002c0006	a0002c0006t0030	a0002c0006t0030g0008	YRI	AFR	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	NA18522	hp2	a0001	a0001c0001	a0001c0001t0003	a0001c0001t0003g0329	YRI	AFR	ABAT	chr16	8669617	8789570
ABCA10_chr17_69143007_69233824	NA18522	hp1	a0001	a0001c0001	a0001c0001t0002	a0001c0001t0002g0181	YRI	AFR	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	NA18522	hp2	a0006	a0006c0016	a0006c0016t0004	a0006c0016t0004g0186	YRI	AFR	ABCA10	chr17	69143007	69233824